Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21300 384 / 3e-132 RNA methyltransferase family protein (.1) AT2G28450 81 / 3e-17 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G27180 45 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009743 [exp] 488 / 9e-173 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10041301 [exp] 84 / 3e-18 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10037411 [exp] 84 / 4e-18 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195300 [exp] 409 / 7e-142 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1) Potri.001G194701 [exp] 124 / 1e-36 AT3G21300 123 / 8e-35 RNA methyltransferase family protein (.1) Potri.009G013000 [exp] 81 / 4e-17 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.001G331900 [exp] 44 / 6e-05 AT3G27180 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05958 [flax] [poplar] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000172 pacid=23143165 polypeptide=Lus10000172 locus=Lus10000172.g ID=Lus10000172.BGIv1.0 annot-version=v1.0 ATGGTTAACTTGGTGACATCTTCTTACAAGCTGGACCTGCTGAATCCCCTGGTTGAAAAGATTTCAGCTATTCCAGAAGTGGTAAGCATTGTGAATAATG TAAATTCTTCCGTTGGCAACACATCTGTTGGGGAGATGGAGTACACTCTTCATGGAAGGTCTACCATCACAGAGACTTTGAGAGGTCTAACCTTCCAGAT TTCTGCTAATTCATTCTTCCAAACAAACACTAGTCAGGCAGAGGTTCTCTATAAACTCATTGAAGACTGTGCTGAACTTAGAGGAGATGGCTCAGAGATC GTTCTTGACCTTTTCTGTGGAACAGGCACCATTGGTCTGACGCTGGCAAGAAAGGCGAAACATGTGTATGGCTATGAAGTAGTTCCTCAGGCTATATCAG ATGCTCAAACAAATGCTAAGTTGAATAACATCAGTAATGCCACCTTTGTCCAAGGGGATCTTAACAAGATCAGTGAAAATTTTGGCAGTGATTTTCCGAA GCCCGATCTTGTTATTTCAGATCCAAACCGTCCTGGAATGCATATGAAGCTGATCAAGTTTCTACTCAAGCTTAGAGCACCTCGTATTGTCTATGTATCC TGTAACCCTTCCACTTGTGCTCGTGATCTGGATTACCTTTGCCATGGGGTGAAGGAGAAGAACATAGAAGGAAGTTACAAAGTGAAAAGCATACACCCGG TGGACATGTTCCCTCATACTCCTCATATCGAATGTGTTTGTCTACTCGAACTTGACTCGACTTCATAA
AA sequence Show only first row Show all	>Lus10000172 pacid=23143165 polypeptide=Lus10000172 locus=Lus10000172.g ID=Lus10000172.BGIv1.0 annot-version=v1.0 MVNLVTSSYKLDLLNPLVEKISAIPEVVSIVNNVNSSVGNTSVGEMEYTLHGRSTITETLRGLTFQISANSFFQTNTSQAEVLYKLIEDCAELRGDGSEI VLDLFCGTGTIGLTLARKAKHVYGYEVVPQAISDAQTNAKLNNISNATFVQGDLNKISENFGSDFPKPDLVISDPNRPGMHMKLIKFLLKLRAPRIVYVS CNPSTCARDLDYLCHGVKEKNIEGSYKVKSIHPVDMFPHTPHIECVCLLELDSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	0	1
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	1.0	0.9483
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	2.0	0.9228
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	4.9	0.9065
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10028045 [exp]	5.8	0.8677
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	6.0	0.9105
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	8.1	0.8960
AT2G40435			unknown protein		Lus10010217 [exp]	13.0	0.8369
AT2G19740			Ribosomal protein L31e family ...		Lus10025830 [exp]	13.3	0.8715
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	21.9	0.8526
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	22.4	0.8338

Compare expression of checked genes

Lus10000172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.