Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 342 / 3e-115 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 337 / 5e-113 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 261 / 2e-84 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT5G07100 234 / 1e-75 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 232 / 4e-72 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26640 228 / 5e-71 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G26440 224 / 2e-68 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G30250 198 / 2e-60 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 194 / 1e-59 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 180 / 5e-53 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036800 [exp] 612 / 0 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10037131 [exp] 545 / 0 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 371 / 4e-127 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 358 / 2e-122 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10015377 [exp] 296 / 1e-96 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10032887 [exp] 249 / 5e-77 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 242 / 6e-76 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10027139 [exp] 246 / 9e-76 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 241 / 4e-75 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 342 / 4e-115 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 314 / 3e-104 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 286 / 8e-93 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.016G128300 [exp] 243 / 1e-75 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 245 / 2e-75 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 241 / 8e-74 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 235 / 7e-73 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G361600 [exp] 233 / 5e-72 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 232 / 7e-72 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 230 / 7e-71 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10000173 pacid=23154549 polypeptide=Lus10000173 locus=Lus10000173.g ID=Lus10000173.BGIv1.0 annot-version=v1.0 ATGTTCATGGATCCGCCGGCGATTAGTCCAGCGACGCTGCTTGAATCGCCGGAATTCCGAATGTTTTATCCTCAGGAATCTTATGGAATGAGCAACCAGC AGGCCTTAGCTCTGGTACCAGCATCGGCACTTCCACATCACGAGACAACGAAAGACAACTACTCCAAATCGACAAAGATGGAGACTTATCCCGATCAAGG GTACCAATCCTCGTCATTTATCGTGGTTGACAAGCCAGCTGACGACGGGTACAAGTGGAGGAAGTACGGGCAGAAACAGGTGAAAGGCAGTGAGTTGCCC AGGAGTTACTACAAATGCACACACCTGAAATGCCCCGTAACGAAAAAGGTTGAGAGGTCCCTTGAAGGACAAGTAACTGAGATCATATATAAAGGGCAGC ATAACCATCATCCTCCACAGTCCAACAAACGCGGTAAGGATCAGGGGAATAATGTCGAGTTGGGTTCGCAGTTTCGGGATTCGAAGGAGTCTAGTCAAGC CACAGCAGACCGTTTGTCCGCGAGTAGTGACAGTGATGCCGAGACAGCCAATTACGAAGCCGAAGAGCCTGATGCCAAACGAAGAAATATTGAGGTTAGG GTAACTGACTCAACTTCATCACATAGAACTGTCACGGAACCGAGGATCATTGTGCAGACAACGAGTGAAGTTGATCTCCTCGACGATGGATACAGATGGC GAAAGTACGGGCAGAAGGTCGTTAAAGGAAATCCTTATCCAAGGAGCTACTACAAATGCACAACGCAAGGGTGCAATGTAAGAAAACATGTCGAGAGGGC TGCAACGGATCCCAAAGCGGTTATAACAACGTACGAGGGAAAACACAACCACGACGTCCCAGCATCCAAGAACAGCAGCCATAGTAGTACTGCTAACAGT AGTCTTGACAAGCTTTCGACTCAGCAACCCGTGGTGCAGTTGCGGTTGAAAGAACGGATAGCATGA
AA sequence Show only first row Show all	>Lus10000173 pacid=23154549 polypeptide=Lus10000173 locus=Lus10000173.g ID=Lus10000173.BGIv1.0 annot-version=v1.0 MFMDPPAISPATLLESPEFRMFYPQESYGMSNQQALALVPASALPHHETTKDNYSKSTKMETYPDQGYQSSSFIVVDKPADDGYKWRKYGQKQVKGSELP RSYYKCTHLKCPVTKKVERSLEGQVTEIIYKGQHNHHPPQSNKRGKDQGNNVELGSQFRDSKESSQATADRLSASSDSDAETANYEAEEPDAKRRNIEVR VTDSTSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYEGKHNHDVPASKNSSHSSTANS SLDKLSTQQPVVQLRLKERIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	0	1
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	2.8	0.9751
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	3.2	0.9812
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	3.3	0.9826
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	3.5	0.9748
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	4.2	0.9701
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004858 [exp]	5.7	0.9663
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	8.3	0.9641
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	8.4	0.9699
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	9.8	0.9742
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	10.5	0.9762

Compare expression of checked genes

Lus10000173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.