Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13970 223 / 9e-72 Protein of unknown function (DUF1336) (.1) AT3G29180 216 / 6e-69 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 211 / 2e-67 Protein of unknown function (DUF1336) (.1) AT1G59650 180 / 3e-55 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 179 / 5e-55 Protein of unknown function (DUF1336) (.1) AT5G25010 42 / 4e-05 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037132 [exp] 266 / 6e-89 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10026633 [exp] 257 / 4e-85 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 254 / 2e-84 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 162 / 2e-50 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 163 / 1e-48 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 162 / 2e-48 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 157 / 2e-46 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 155 / 5e-46 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10040406 [exp] 39 / 0.0006 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 229 / 3e-74 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 223 / 2e-71 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.008G190500 [exp] 175 / 5e-53 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 168 / 5e-51 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 164 / 5e-49 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 41 / 0.0001 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 39 / 0.0004 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.010G223400 [exp] 39 / 0.0007 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10000174 pacid=23154550 polypeptide=Lus10000174 locus=Lus10000174.g ID=Lus10000174.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCCAAGGGCTTTACCAAAGAGTCAACAGTTCCATTCAGGCAAAGGCTGAAGCTTGTGGTGGGACTAGCGAATCCCGACGATCTCAACTTGA GCTCGACGGAGACGAAGCTGATCCATGCTTACAACGAGAAGCCCGTGCTTTCTCGGCCTCAACACCAGTTCTTTAGCGGTTCGAATTACTTGGAAATTGA CCCGGACATTCACCGGTTCAGCTACATTTCGAGGAAGGGTCTCGAATCGTTTAGGGACAGGTTGAAGCTCGGGATTGCAAATGTTGGCTTGACAATTCAG GCACAGAAGCCTGAAGAATTGCCGGAGCAAGCACTGTGCTGTTTGAGGTTGAACAAGATCGATTTCGTGAACCGTGGCCAGATTCCTACCCTTGTAACCC AGGATGATTGA
AA sequence Show only first row Show all	>Lus10000174 pacid=23154550 polypeptide=Lus10000174 locus=Lus10000174.g ID=Lus10000174.BGIv1.0 annot-version=v1.0 MEKAKGFTKESTVPFRQRLKLVVGLANPDDLNLSSTETKLIHAYNEKPVLSRPQHQFFSGSNYLEIDPDIHRFSYISRKGLESFRDRLKLGIANVGLTIQ AQKPEELPEQALCCLRLNKIDFVNRGQIPTLVTQDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	0	1
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	1.0	0.9193
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	4.6	0.9046
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	4.9	0.9129
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	7.4	0.8982
AT5G24600			Protein of unknown function, D...		Lus10032916 [exp]	7.7	0.8943
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	8.5	0.8869
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	8.7	0.8544
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	9.4	0.9021
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	9.5	0.8926
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	11.8	0.8513

Compare expression of checked genes

Lus10000174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.