Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 261 / 7e-88 MAC/Perforin domain-containing protein (.1.2) AT1G28380 202 / 2e-62 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 155 / 8e-45 MAC/Perforin domain-containing protein (.1) AT1G29690 144 / 8e-41 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035789 [exp] 332 / 2e-112 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 263 / 4e-86 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 207 / 2e-64 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 206 / 9e-64 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10015324 [exp] 185 / 1e-56 AT4G24290 312 / 8e-100 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 177 / 7e-53 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10021803 [exp] 144 / 5e-41 AT1G28380 377 / 9e-125 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 140 / 3e-39 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 140 / 4e-39 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006500 [exp] 301 / 1e-100 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 239 / 7e-77 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 228 / 2e-72 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 207 / 3e-64 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 204 / 5e-63 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 167 / 2e-49 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 161 / 4e-47 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 161 / 6e-47 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 141 / 6e-40 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 131 / 5e-36 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10000175 pacid=23149316 polypeptide=Lus10000175 locus=Lus10000175.g ID=Lus10000175.BGIv1.0 annot-version=v1.0 ATGGCACTCAGACTTCCTGCTCCACAGGCAGCTGAGATTGCAATTGGCTCCATAGGGCTTGGATATGACATTGCAGTCGATCTGAGGTTAAAATACCGAA AAGTAGATGTAAATGATTCACGCTTGATTGAGATTGATGAGGACGGTGGTCGAGAGATCGGACTGCCTGGTGGGTTTGTCATCCCAAATGTCCCAAAATC AATTAAATGTGATAAAGGTGAAAGAACGAGGTTTAGATCAGATGTTCTGTCTTTCCAGCAGATGTCGGAGCAGTTCAACCAGGAAATGTCTCTAACAGGA AAAATACCCTCTGGACTCTTCAATACCATGTTTGAATTCTCAAGCTGCTGGCAGAAAGATGCAGCTAACACCAAAACCCTTTCTTTTGATGGGGTATTCA TTACACTATACTCAGTTGCACTGGAGAAATCTCAGATTGTTCTCTGTGATCATGTTAAGAAGGCAGTCCCGTCATCGTGGGAACCAGCTGCCCTGGCCAA GTAA
AA sequence Show only first row Show all	>Lus10000175 pacid=23149316 polypeptide=Lus10000175 locus=Lus10000175.g ID=Lus10000175.BGIv1.0 annot-version=v1.0 MALRLPAPQAAEIAIGSIGLGYDIAVDLRLKYRKVDVNDSRLIEIDEDGGREIGLPGGFVIPNVPKSIKCDKGERTRFRSDVLSFQQMSEQFNQEMSLTG KIPSGLFNTMFEFSSCWQKDAANTKTLSFDGVFITLYSVALEKSQIVLCDHVKKAVPSSWEPAALAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10000175 [exp]	0	1
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	3.7	0.8852
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	6.3	0.8867
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	8.2	0.8844
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	9.8	0.8845
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	12.0	0.8827
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	12.7	0.8836
AT4G16180			unknown protein		Lus10017062 [exp]	18.5	0.8830
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	19.9	0.8776
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	20.4	0.8650
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	21.2	0.8613

Compare expression of checked genes

Lus10000175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.