Plant FIBer expression Database

Lus10000178 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023536
[exp]
213 / 1e-71 ND /
Lus10040421
[exp]
148 / 4e-45 ND /
Lus10019772
[exp]
149 / 3e-41 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Lus10012947
[exp]
129 / 1e-38 ND /
Lus10029608
[exp]
116 / 3e-33 ND /
Lus10025569
[exp]
123 / 4e-33 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3)
Lus10017291
[exp]
117 / 8e-31 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3)
Lus10013548
[exp]
115 / 1e-30 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3)
Lus10017290
[exp]
114 / 2e-30 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10000178 pacid=23158588 polypeptide=Lus10000178 locus=Lus10000178.g ID=Lus10000178.BGIv1.0 annot-version=v1.0
ATGAAAGATTGCGGAGAAGAAGAAATCACTTGGGAGGAGGAGCTACAGCCGGCTCGTAGCTGTCGCCGTACGGTGGAGGATCAACACGAAAAGATTGTAG
ACTTCCGAGCTCCAGGTCCGCTCGAGCATGCTCCTCTGCCGTGGGCCGGAGTACGGTCCCACCGATTCGCGCTCAAAGCACAATCCGGTTTGCTGATCGC
TCTCGCCAGAAGGCTGTTCTGGAAGACCTTATCTCGCACCTGGCAGAGTTTAAGGAGACTGCTCCTCTCTGTCTGTCAACTCTCGAAACTTGCCTTGTTA
TCGAAACTTCTAAAGGCAAATATGAGCAAGGATTTGGAGGGGAGGCTGGCTTACAGGAAAGGGAAACTGTCAACTTTGCAGGCAGAGGTTTCTAAACTTG
TGGAAGAAGGCTTGAAGCTGGATGTCGAAATTCAACAATTAACTGCTCGGAGGGCCAAAATTCTTGAACCCGTGAATTCTACTTCGGTGGAACTGGAGAA
GGCTAACCAAGAGGCTTCCAAGGAACTGGATGAACTGAAGAAGGAAAGTAACGAGATTAATCAAGCAGGCAAAAAGCGGATGAGAGCCATGGAGGACCTT
GCTCAGGCTAATGCAAGTTGGAAACTTTTCAAGAATTTAGGATGGAAATAG
AA sequence
>Lus10000178 pacid=23158588 polypeptide=Lus10000178 locus=Lus10000178.g ID=Lus10000178.BGIv1.0 annot-version=v1.0
MKDCGEEEITWEEELQPARSCRRTVEDQHEKIVDFRAPGPLEHAPLPWAGVRSHRFALKAQSGLLIALARRLFWKTLSRTWQSLRRLLLSVCQLSKLALL
SKLLKANMSKDLEGRLAYRKGKLSTLQAEVSKLVEEGLKLDVEIQQLTARRAKILEPVNSTSVELEKANQEASKELDELKKESNEINQAGKKRMRAMEDL
AQANASWKLFKNLGWK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000178
[exp]
0 1
AT4G16195 Plant self-incompatibility pro... Lus10011069
[exp]
9.0 0.7569
Lus10043281
[exp]
9.8 0.7461
AT3G05260 NAD(P)-binding Rossmann-fold s... Lus10021931
[exp]
12.2 0.6284
AT3G15280 unknown protein Lus10009211
[exp]
17.7 0.5717
AT5G51280 DEAD-box protein abstrakt, put... Lus10012900
[exp]
19.7 0.6952
AT2G37980 O-fucosyltransferase family pr... Lus10028253
[exp]
22.4 0.6802
AT1G33530 F-box family protein (.1) Lus10014984
[exp]
23.5 0.6912
AT5G42230 SCPL41 serine carboxypeptidase-like 4... Lus10023444
[exp]
29.1 0.6852
AT4G35620 CYCB2;2 Cyclin B2;2 (.1) Lus10041092
[exp]
30.9 0.6524
AT1G28030 2-oxoglutarate (2OG) and Fe(II... Lus10012760
[exp]
31.5 0.6841

Lus10000178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.