Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G23360 69 / 5e-14 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G69520 47 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G63410 43 / 5e-05 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037553 [exp] 421 / 1e-151 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011441 [exp] 417 / 9e-150 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 83 / 3e-19 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 74 / 9e-16 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10014711 [exp] 47 / 4e-06 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024832 [exp] 41 / 0.0004 AT3G63410 494 / 5e-177 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018747 [exp] 41 / 0.0005 AT3G63410 494 / 1e-174 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088400 [exp] 362 / 8e-128 AT5G57300 470 / 4e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G188600 [exp] 82 / 5e-19 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G159400 [exp] 44 / 4e-05 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G047100 [exp] 42 / 0.0002 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G215900 [exp] 40 / 0.0005 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01209 [flax] [poplar] Ubie_methyltran ubiE/COQ5 methyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10000179 pacid=23148025 polypeptide=Lus10000179 locus=Lus10000179.g ID=Lus10000179.BGIv1.0 annot-version=v1.0 ATGAAGCATCTAGATGTGGCTGGCGGTACTGGGGATGTTGCTTTCAGAATTCTTGAAGCTGTAAACAGTGTCAGACGAAGAGCGATCCAAGATCCTTCGA ATGAAAACCTACTTGAAGAAACTGAGATTTACGTGTGCGATATAAATCCAAACATGTTGAATGTTGGTAAAAAGCGGGTCATAGAAAGAGGTCTTGGCGA AATGAAATCCCTTGTATGGGTGGAGGGGGACGCTGAAGCCCTGGACTTTCCAGATAATTCAATGGATGGTTATACGATAGCATTTGGGATAAGAAATGTT ACACACATAGAGAAAGCTCTTGCTGAAGCTCACCGGGTATTAAAGCGTGGAGGAAGATTCCTTTGCCTTGAACTGAGTCATGTGGATGTTCCCCTGCTTA AACAAGTGTATGACTACTATTCATTCTCAGTCATTCCAGCCGTAGGAGAACTTGTTGCTGGGGATCGTGAATCGTACCAGTACTTGGTTGAAAGCATTCG CCGCTTCCCACCGCAGGATAAATTTGCAGCAATGATAGCAGAAGCAGGGTTTCAGAAGGTCGAGTACGAAAACCTCGTTGCAGGAGTTGTTGCTATCCAT TCTGGCTTCAAGCTGTAA
AA sequence Show only first row Show all	>Lus10000179 pacid=23148025 polypeptide=Lus10000179 locus=Lus10000179.g ID=Lus10000179.BGIv1.0 annot-version=v1.0 MKHLDVAGGTGDVAFRILEAVNSVRRRAIQDPSNENLLEETEIYVCDINPNMLNVGKKRVIERGLGEMKSLVWVEGDAEALDFPDNSMDGYTIAFGIRNV THIEKALAEAHRVLKRGGRFLCLELSHVDVPLLKQVYDYYSFSVIPAVGELVAGDRESYQYLVESIRRFPPQDKFAAMIAEAGFQKVEYENLVAGVVAIH SGFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10000179 [exp]	0	1
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	5.3	0.6566
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	57.1	0.5783
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10038834 [exp]	66.9	0.5648
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017488 [exp]	73.8	0.5139
AT5G51840			unknown protein		Lus10031667 [exp]	79.9	0.5535
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	112.9	0.5439
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	155.0	0.5114

Compare expression of checked genes

Lus10000179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.