Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35000 372 / 2e-130 APX3 ascorbate peroxidase 3 (.1) AT4G35970 351 / 4e-122 APX5 ascorbate peroxidase 5 (.1) AT3G09640 288 / 5e-98 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT1G07890 276 / 3e-93 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G08390 202 / 7e-63 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 197 / 4e-60 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 124 / 3e-33 APX6 ascorbate peroxidase 6 (.1) AT4G16270 87 / 2e-19 Peroxidase superfamily protein (.1) AT4G30170 79 / 8e-17 Peroxidase family protein (.1) AT5G47000 78 / 2e-16 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028432 [exp] 531 / 0 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10014128 [exp] 372 / 1e-130 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 372 / 2e-129 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 298 / 8e-102 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10013537 [exp] 290 / 2e-98 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 285 / 4e-96 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10025680 [exp] 195 / 4e-59 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 178 / 9e-53 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 132 / 3e-36 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112200 [exp] 379 / 4e-133 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 364 / 3e-127 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 363 / 3e-127 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 298 / 6e-102 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 294 / 4e-100 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 293 / 8e-100 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.002G081900 [exp] 201 / 9e-62 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.005G179200 [exp] 196 / 7e-60 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G254500 [exp] 122 / 3e-32 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.006G089000 [exp] 98 / 2e-25 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10000180 pacid=23149030 polypeptide=Lus10000180 locus=Lus10000180.g ID=Lus10000180.BGIv1.0 annot-version=v1.0 ATGGCGGAACCAGCAGCAGCAACACCGGTAGTGGATGCAGAGTACTTGAAGGAGATTGATAAGGCTCGCCGCCAACTTCGCGCTCTCATTTACGGCAGAC AATGCGCTCCCATCATGCTTCGCTTAGCATTTCATGATGCGGGGACATATGATGCGAGAACGCGGACCGGAGGGCCTAACGGTTCGATCCGGCACCGGAA TGAGCTGTCTCGTGTTGCTAACTCTGGCATTAACGTCGCCATTGACTTCTGCGGTCAGCTTCTGAAAAAGAATCCCATCTGTCTAAAGTTGCTAACTTTG TTGTTGGAACAAATCAAGGCTATGCATCCCAGGATCACCTATGCAGATTTGTACCAGCTTGCTGGAGTTGTTGCAGTTGAGGTGACAGGAGGTCCATCAA TTGACTTTGTCCCAGGCAGAAAGGATTCGACAGAGTCAGCTGATGAAGATGGGCGCCTACCTAATCCAAACCAAGGTCCTTCTCACCTCAGAGATGTCTT CTACAGAATGGGTCTTTCTGATAGGGATATTGTTGTACTTTCTGGCGCCCACACTCTGGGAAGAGCACATCAAGAAAGATCAGGTTTTGATGGTCCATGG ACCAAGGAACCATTCAAGTTTGACAACTCTTACTTCGTGGAGCTGGCTAAAGGGGAGACACAAGGACTGGTGAAGATGCCGACTGACAAGGCTCTAATGG AAGATCCCAGGTTCCGCGAATTCGTCATGTTATACGCCAAGGATGAAGATGCATTCCTTGAAGACTATGCAATGTCACACAAGAAAATGTCCGAACTTGG TTTCTCCTCAGCAATCTGGCGCAAGGTTCGAGCTTTGCTGTGGCTTCAGCATCTCAAAGCCTTGGTTGGATACAGCCGGCGAACCAAGTGA
AA sequence Show only first row Show all	>Lus10000180 pacid=23149030 polypeptide=Lus10000180 locus=Lus10000180.g ID=Lus10000180.BGIv1.0 annot-version=v1.0 MAEPAAATPVVDAEYLKEIDKARRQLRALIYGRQCAPIMLRLAFHDAGTYDARTRTGGPNGSIRHRNELSRVANSGINVAIDFCGQLLKKNPICLKLLTL LLEQIKAMHPRITYADLYQLAGVVAVEVTGGPSIDFVPGRKDSTESADEDGRLPNPNQGPSHLRDVFYRMGLSDRDIVVLSGAHTLGRAHQERSGFDGPW TKEPFKFDNSYFVELAKGETQGLVKMPTDKALMEDPRFREFVMLYAKDEDAFLEDYAMSHKKMSELGFSSAIWRKVRALLWLQHLKALVGYSRRTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	2.2	0.9763
					Lus10035048 [exp]	2.4	0.9761
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	2.6	0.9705
AT4G22370			unknown protein		Lus10003793 [exp]	4.0	0.9686
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	4.2	0.9667
AT4G37445			unknown protein		Lus10001408 [exp]	4.5	0.9748
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	4.5	0.9718
					Lus10037173 [exp]	4.5	0.9666
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	5.2	0.9761
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	6.0	0.9712

Compare expression of checked genes

Lus10000180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.