Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30970 346 / 6e-117 ASP1 aspartate aminotransferase 1 (.1.2) AT5G19550 219 / 1e-67 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT1G62800 210 / 2e-64 ASP4 aspartate aminotransferase 4 (.1.2) AT5G11520 203 / 3e-61 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT4G31990 193 / 2e-57 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025252 [exp] 532 / 0 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 347 / 2e-117 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 347 / 3e-117 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10043222 [exp] 216 / 3e-66 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 214 / 1e-65 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 211 / 3e-64 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 199 / 2e-59 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10001753 [exp] 126 / 1e-32 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107100 [exp] 380 / 2e-130 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.014G143300 [exp] 357 / 4e-121 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.018G082500 [exp] 208 / 2e-63 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 204 / 1e-61 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.018G022200 [exp] 196 / 2e-58 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G260200 [exp] 191 / 2e-56 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G241500 [exp] 186 / 1e-54 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10000181 pacid=23161049 polypeptide=Lus10000181 locus=Lus10000181.g ID=Lus10000181.BGIv1.0 annot-version=v1.0 ATGGCTGGTTTGCTGGGTACCATCAGAATTTTCCACAGCCTCAATCTTATAAGGGGAGCTTCCCAGTCGTCGAGAATGAGGACAAATCAACCGCCAGCAG CTTCTAAGGAGAAAAATAGCGTCATCCCTCAGCTAGGGCTTCCCGGTGATTGGATCATATTGGTCCGGCATCAACGGACCTCGTTACTGCCGTCTCCGAG GCTTTCATTGCCGACCCTTTTCCCAATAAGGGATGATCAAGGGAAGCCTGTTGTCCTACAGTGTGTTCGGGACGCTGAAGACAAGATTAGGGATTTCGAT AACATGGACTCTGTTTCCTCTATGGGTTCAAATGTAGTGGAAGAGAGCGTGAAGCTAGTGGATGGGGAAAATTCGGATGTTGTTACAGAAAAAAGGTTCG CTGGAGTGGCGGCTCTGTCTGGAACTGGTGGATGCCGCCTCTTTGCTGAATCTTCCATTTACTTGCCTGATCCAACTTGGTCCAACCGCCATAACTTATG GACCAATGCATATGTTCCAACGAAGATGTTCCGTTACTACCATCGACATACGAAGGATTTGGACTTCACCGCTCTTATGAATGATCTCAAGGTGAAAAAT CATTTCCCGTTCTTCGACATGGCTTATCAAGGTCTAGTAAGCGGAGACATGGATAGAGATGCCTTGTCAATCCGGATTTTCCTCCAGGATGGACATTTCA TTGGCTGCTCTCAGTCCTTCACAAAGACCATGGGATTGTTTGGGCATCGCGTTGGATGTCTTAGCATTCTCTGTACTGATTCAGAGAAGGCTCGTCAAGT GAAAACTCAACTGCAGCAGATTGCTGGATCATTGTATGGCAGCGCTCCAAAGCATGGTGTACTATTGCTCTCAACGATCTTGAGCAACCCACAATTGAAG TCACTCTGGATCAAAGAGGTGAAGTCAATGGCTAATCACATACGAAGCACTCAATCTACACTACGGGGAAGGCTTGAGTTGACTGGTTCTTCTCTCAATT GGGAACACATCACAAAGCAGGTAGGCATGTTCGCCGTCTCTGGTCTAACCAGAGAGCAAGTTGATCGGCTAGCAGAAGACTTCCACGTTTACATAACCCC GAATGGACACGTATGA
AA sequence Show only first row Show all	>Lus10000181 pacid=23161049 polypeptide=Lus10000181 locus=Lus10000181.g ID=Lus10000181.BGIv1.0 annot-version=v1.0 MAGLLGTIRIFHSLNLIRGASQSSRMRTNQPPAASKEKNSVIPQLGLPGDWIILVRHQRTSLLPSPRLSLPTLFPIRDDQGKPVVLQCVRDAEDKIRDFD NMDSVSSMGSNVVEESVKLVDGENSDVVTEKRFAGVAALSGTGGCRLFAESSIYLPDPTWSNRHNLWTNAYVPTKMFRYYHRHTKDLDFTALMNDLKVKN HFPFFDMAYQGLVSGDMDRDALSIRIFLQDGHFIGCSQSFTKTMGLFGHRVGCLSILCTDSEKARQVKTQLQQIAGSLYGSAPKHGVLLLSTILSNPQLK SLWIKEVKSMANHIRSTQSTLRGRLELTGSSLNWEHITKQVGMFAVSGLTREQVDRLAEDFHVYITPNGHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	3.2	0.8100
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	3.2	0.8847
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	6.5	0.8531
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	7.5	0.8175
AT4G05220			Late embryogenesis abundant (L...		Lus10020065 [exp]	8.5	0.7599
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	8.9	0.7295
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	10.7	0.7313
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	11.2	0.8067
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	13.0	0.8186
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	15.3	0.7559

Compare expression of checked genes

Lus10000181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.