Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15417 226 / 9e-74 ATRTL1 RNAse II-like 1 (.1) AT3G20420 164 / 4e-48 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT1G01040 159 / 9e-44 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 123 / 2e-31 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT5G20320 123 / 2e-31 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 121 / 1e-30 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G45150 109 / 1e-26 RTL3 RNAse THREE-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015141 [exp] 400 / 7e-143 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10005141 [exp] 156 / 3e-45 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 157 / 1e-43 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 129 / 3e-33 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019587 [exp] 119 / 2e-30 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10036447 [exp] 116 / 8e-29 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019757 [exp] 97 / 3e-22 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10005142 [exp] 41 / 0.001 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226700 [exp] 300 / 3e-102 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 171 / 3e-51 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.002G181400 [exp] 160 / 4e-44 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 132 / 1e-34 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.008G075900 [exp] 119 / 4e-30 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 113 / 5e-28 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 107 / 7e-26 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10000182 pacid=23157948 polypeptide=Lus10000182 locus=Lus10000182.g ID=Lus10000182.BGIv1.0 annot-version=v1.0 ATGGAAACCCAAAAAGATCTTTCACCGCCGCCGCCGTTGGAGGAGGTGGAGGAAATCATTGGGTACAGTTTCAAGGACAAGAAGTGGCTGGAGGAGGCGT TGACTCACCCGTCGTTTTACTACAGGTACGACGTTGACCTCAAGGGCGGAGGAGGCGAAAGAAACGACACCGTGTCATCGTACGAGAGGCTGGAGTACGT AGGAGACAGCGTGCTTAACATGATATTTACGAGGGAGCAGTTTTTCCGGTACCCGGAGCTGATGCCCGGTGACCTGACCCGGCTCCGGGCAGCCAACGTG GACACGGAGAAGCTCGCCAGGGTGGCGTTGAAGCACGGTTTGTTTCGGTATCTGCGTCACAAAAAGATGTTGCTTGGGGACCAAATTGAAGAATTCTCCA GAGAAATTAAGGAATTTCCTGTTCATTCCAATGGGCTCGTAAACCCTCCAAAGACTTTGGCGGACCTTGTCGAATCTTTGATCGGAGCCGTCTTCATCGA CAGTGATTGCTCCGTCCACACTGTATGGAAGGTGTTCAAGAGATTGTTGGAGCCAATAGTAGAGAAGGACACACTGAAAGTGCACCCAGTAACAGAGCTG CACGAGATCTGCCAGAAGAGGAAGCTAAAATTGGAGTTCAAAGGCTTGTGGAAGGAAGGGATAGATGTGTACGTAAACGACCAATTTGCAGGGAGAGGGA GCTACGAGTCCAAGAAGGAAGTTGCCCAAAACAGAGCCGCCAAAGATGCTCTGGACAACTTCGAGAAGATCATAGTAGTCTTGCCGCACAAAGATGAGGT AGAGCTGGTTCGTGTCGATGATGACGAAAATGTGTATGACTCCGAGTCAGTGTAG
AA sequence Show only first row Show all	>Lus10000182 pacid=23157948 polypeptide=Lus10000182 locus=Lus10000182.g ID=Lus10000182.BGIv1.0 annot-version=v1.0 METQKDLSPPPPLEEVEEIIGYSFKDKKWLEEALTHPSFYYRYDVDLKGGGGERNDTVSSYERLEYVGDSVLNMIFTREQFFRYPELMPGDLTRLRAANV DTEKLARVALKHGLFRYLRHKKMLLGDQIEEFSREIKEFPVHSNGLVNPPKTLADLVESLIGAVFIDSDCSVHTVWKVFKRLLEPIVEKDTLKVHPVTEL HEICQKRKLKLEFKGLWKEGIDVYVNDQFAGRGSYESKKEVAQNRAAKDALDNFEKIIVVLPHKDEVELVRVDDDENVYDSESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	0	1
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	1.0	0.9798
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	3.5	0.8368
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	8.0	0.7857
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	12.4	0.7989
AT4G03230			S-locus lectin protein kinase ...		Lus10039725 [exp]	15.3	0.7735
AT2G26470			unknown protein		Lus10025870 [exp]	25.1	0.7149
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	31.4	0.8166
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	36.1	0.8052
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	37.5	0.7554
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10010201 [exp]	42.8	0.7728

Compare expression of checked genes

Lus10000182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.