Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37510 190 / 2e-57 CI76, EMB1467 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009539 [exp] 114 / 6e-30 AT5G37510 672 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Lus10020363 [exp] 114 / 6e-30 AT5G37510 1140 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G136133 [exp] 200 / 5e-61 AT5G37510 1252 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Potri.004G082800 [exp] 197 / 5e-60 AT5G37510 1248 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10000183 pacid=23175243 polypeptide=Lus10000183 locus=Lus10000183.g ID=Lus10000183.BGIv1.0 annot-version=v1.0 ATGGGACTGGGGTTACTAGCTTCGCGGGTCATCAGGCCCCACGTGGCCTCCAGGAATCTCTTCCTCCTACGCTCAATCGTCACCAAGCCGGAGCTTCAAT CCCCCGAGGCCGCCGCTGCAGCTGCAGCTCCGGAGCCGAAACCAGATCTCCCGCCGCGGACGCCGGTGGCGGGAGCTAGGGTGCACTTCTCCAACCCGGA GGACGCGATCGAGGTGTTCGTCGATGGATATCCGGTGAAAATCCCCAAGGGGATGACCGTTCTCCAGGCCTGTGAGGTGGCCGGAGTCGATATCCCGAGG TTCTGTTATCATAGCCGGCTGTCGATCGCTGGGAACTGTAGGATGTGTCTCGTTGAGGTCGAGAAGTCGCCCAAGCCTGTAGCTTCATGCGCCATGCCTG CTCTTCCTGTACGGAAGTTATCTAGCATGTATGCTGGAACGGAAAAGTAG
AA sequence Show only first row Show all	>Lus10000183 pacid=23175243 polypeptide=Lus10000183 locus=Lus10000183.g ID=Lus10000183.BGIv1.0 annot-version=v1.0 MGLGLLASRVIRPHVASRNLFLLRSIVTKPELQSPEAAAAAAAPEPKPDLPPRTPVAGARVHFSNPEDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPR FCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPVRKLSSMYAGTEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	2.4	0.9294
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	3.5	0.9311
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	3.5	0.9256
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	3.5	0.9306
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	3.9	0.9205
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	4.9	0.8957
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	5.1	0.8934
AT1G79090			unknown protein		Lus10031788 [exp]	6.0	0.8893
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	6.6	0.8971
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	8.4	0.8994

Compare expression of checked genes

Lus10000183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.