Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34610 395 / 2e-130 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 367 / 4e-120 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G19700 309 / 4e-97 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 307 / 2e-96 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G35940 265 / 1e-78 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 245 / 5e-71 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 240 / 5e-70 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G41410 232 / 2e-67 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT2G27220 223 / 6e-66 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G75430 211 / 6e-63 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028802 [exp] 1169 / 0 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 1135 / 0 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 312 / 1e-96 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10010633 [exp] 295 / 3e-91 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10004201 [exp] 297 / 6e-91 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10033192 [exp] 281 / 7e-86 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10013579 [exp] 270 / 6e-82 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 229 / 8e-68 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022599 [exp] 220 / 9e-63 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159300 [exp] 796 / 0 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 781 / 0 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 384 / 2e-124 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.016G069700 [exp] 313 / 4e-97 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 312 / 1e-96 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 293 / 5e-89 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 293 / 9e-89 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 261 / 2e-77 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 253 / 2e-74 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G232000 [exp] 246 / 7e-74 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10000184 pacid=23174347 polypeptide=Lus10000184 locus=Lus10000184.g ID=Lus10000184.BGIv1.0 annot-version=v1.0 ATGGCAACTTATTATCCTGGTGCCAACAATCAGAGGGAGGGGCCTCCAATGATATACCATCTACCGGGTGGTGGTTCGTATTCGGAGACGACTCCGGTTC TTACTGGCAACATGATGATGTACATGAATGCTGCTGGTTCGTATTCGGATGCTCAGCAGCAAAACAACAGCTGTATTGATATCCAGTCTGTCGAAGGGTC AGCCTCGTCTCAGCAGGAGATGTTAGCGAATCTCGGAGGGTCTCGAGTTAGTGATCATCAGCATGATTACAACACATGGAGGGATATGCAGTCGATCGGT GGAACCGATGCTTCTGGCAGCATTCTTCAAGGTGGTGGACAGAGTTTGCAAGGGCAAGGCTTGTCTTTAAGCCTCGGCACGCAAATCCCATCTGGAATCC AAATGCATTCCATCCCATACCGAAATGCGAACCAAGGATTCACATCGTTCTTGAGTACCACAAATCCATCCTCTTCATCGAATAGGGATGATGAGTTGAG AAGTGCTGAGTATATGCAGCAGCAGGTTGGTGGCTATCATACTCAGGATTCCGGTAAAGGAGATTTCGCTCAGTATGGAATGACGAGCATTGCAAGGACT ATCCCTAATTCCAAGTACCTCAAGGCTGCACAGCAACTGCTCGATGAGGTTGTCAATGTTCGCAAAGCTTTGAGACAGCCTGATAAGGAGAAAAGCCAGA AAGGAAATGAGAATGAGATGAATAGCTCCAAGGAAGGTGACAGTGGTTCCAAGAACGGACCTTCAGACCCTCAAGAATCCGCGAGCAATCCAGTTAGTGA GCTCTCGCATTCAGAGAGACAGGAATTGCAGAATAAGTTGACTAAGCTTTTGTCCATGTTGGATGAGGTTGACAGGAGGTACAAGCAGTATTATCACCAG ATGCAGATAGTGGTGTCATCATTTGATGTCATAGCAGGCTGTGGAGCAGCAAAGCCTTACACCGCACTTGCGTTGCAGACGATCTCTCGCCACTTCCGGT GCTTGAGGGATGCAATTAATGGACAGATAAGATCGGTGAGGAAGAGCTTAGGGGAGCAAGAGACGTTAGAGAACAGCAAAGGCGTTTCCATAACGAGACT TCGGTATGTGGATCAGCAGCTAAGACAGCAAAGGGCTCTTCAACAACTTGGCATGATGCAACAGCACACTTGGAGACCACAGAGAGGGCTGCCTGAAAAC TCTGTCTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTTCTCCATCCTTATCCAAAGGATTCTGACAAGATAATGCTGGCTAGGCAGACGGGATTAACTC GAGGCCAGGTCTCAAATTGGTTCATCAATGCACGAGTTCGTTTATGGAAGCCTATGGTGGAAGAAATGTACAAGGAAGAGACTGGTGATATGGAAATGGA CTCGAACTCATCCTCCGAAAATGCTGCAAGAGCGCTTTCAAAAGCCGACATGAGAAGCTCCGAGGATGGAGGAGGGGAAGAAATGCAACAGACTGCCAGC TCAGCTGCTACGGAAAGATACGGTGGTGCTCAAGCTATGGAGAAAACTGATCATGTTCATCATAACATGGAGATGGCAGGCTCAACTTCAAGGGCACACT TCCAGTTCGGCTCACACGGAGATGGCCTAACTGAATATGGCTTAATGAAGCTAAGGGAGGAGCAGAGGCCTGGAGTCGTTGACGATTGTGGTGGTCTTTA CAACGATGCCATTGTCGGAGGAAGTGATAGGTTCATGGCTGCAGCAGCTGCAGCTTACCAGATGCAGGAAATGGGGAGGTATGAAAGTGGAGCAGGAGGA GTGTCGTTGACGTTAGGGTTGCAGCATTGTGAAGGAGGTAACTTGCCGATATCCGGTGCAGGCCACCAGGGTTTTGTTCCGATGAGAGGGAGTGACGATA TGTACGATGCTACTGCTGGAGCAACATCATCGGCAGGTGGAGAGACAAACGAGTTCGAATGTGTAAATCCGGGGAATAGGCAGCAGCAGCAGAGGTTCAA CTCTTCCCATTTGTTACATGATTTTGTAGCATGA
AA sequence Show only first row Show all	>Lus10000184 pacid=23174347 polypeptide=Lus10000184 locus=Lus10000184.g ID=Lus10000184.BGIv1.0 annot-version=v1.0 MATYYPGANNQREGPPMIYHLPGGGSYSETTPVLTGNMMMYMNAAGSYSDAQQQNNSCIDIQSVEGSASSQQEMLANLGGSRVSDHQHDYNTWRDMQSIG GTDASGSILQGGGQSLQGQGLSLSLGTQIPSGIQMHSIPYRNANQGFTSFLSTTNPSSSSNRDDELRSAEYMQQQVGGYHTQDSGKGDFAQYGMTSIART IPNSKYLKAAQQLLDEVVNVRKALRQPDKEKSQKGNENEMNSSKEGDSGSKNGPSDPQESASNPVSELSHSERQELQNKLTKLLSMLDEVDRRYKQYYHQ MQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQIRSVRKSLGEQETLENSKGVSITRLRYVDQQLRQQRALQQLGMMQQHTWRPQRGLPEN SVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRGQVSNWFINARVRLWKPMVEEMYKEETGDMEMDSNSSSENAARALSKADMRSSEDGGGEEMQQTAS SAATERYGGAQAMEKTDHVHHNMEMAGSTSRAHFQFGSHGDGLTEYGLMKLREEQRPGVVDDCGGLYNDAIVGGSDRFMAAAAAAYQMQEMGRYESGAGG VSLTLGLQHCEGGNLPISGAGHQGFVPMRGSDDMYDATAGATSSAGGETNEFECVNPGNRQQQQRFNSSHLLHDFVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	0	1
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	1.4	0.8081
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	2.8	0.7944
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	7.7	0.7835
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	10.5	0.7396
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042149 [exp]	10.7	0.7558
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	12.0	0.7586
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	14.0	0.7344
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	15.9	0.7499
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	20.7	0.6947
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	23.2	0.7197

Compare expression of checked genes

Lus10000184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.