Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 267 / 1e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 265 / 5e-88 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 192 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 156 / 6e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 149 / 5e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT1G56670 144 / 7e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 142 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 130 / 6e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 129 / 1e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 122 / 1e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011051 [exp] 446 / 2e-159 AT3G26430 340 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003021 [exp] 403 / 3e-142 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 183 / 8e-56 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 182 / 1e-55 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 169 / 2e-50 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 167 / 2e-50 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 164 / 3e-46 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 146 / 8e-42 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 141 / 6e-40 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047900 [exp] 291 / 4e-98 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 268 / 8e-89 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 215 / 3e-68 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 211 / 1e-66 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 206 / 9e-65 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 198 / 1e-61 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 186 / 5e-57 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 149 / 4e-43 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 145 / 1e-41 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G006500 [exp] 143 / 9e-41 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10000185 pacid=23150913 polypeptide=Lus10000185 locus=Lus10000185.g ID=Lus10000185.BGIv1.0 annot-version=v1.0 ATGGCGGAGGGTTTGGGTTTGCCATATTTGAGTGCATTCCTCGACTCAGTTGGCAGCAACTTCAGCCATGGAGCCAACTCCGCCACGGCCGGTTCTACGG TTCGACCGCCGAATCAAACCCTTCACCAGAGCGGGTTCAGCCCTGTCTCCCTTAACGTCCAGTCTTACCAGTTCCATGACTTCGTCAACCACTCCCAAAT CGTCCGAGCCAGAGGAGGAGTGTACTCAAAACTACTACCGAAACCGGAGCATTTCGCCCGAGCGCTCTATACATTCGACATTGGTCAAAACGACCTAACG TCGGCCTACTTCCTCAACATGACCACCGGGCAAGTCGTGGCGCAAATTCTGGACGTGCTCTCCCAATTCAAGGCGGCGGTCAAGTCGGTCTACTCTCGGG GCGGCAGCTACTTCTGGATCCACGGGACCGGTCCGATACGGTGTTTGGCCTATGTCTTGGACCGGGTCCTGACGACCGAGTTAGACGAGGCCGGGTGCGG GGTGCTGATGAACCGGGTGGCTCAACGGTACAACCGTGGGGTGAAGAGGATGGTTAGAGAATTGGAAGTTGAGTTGCCGTTCGCTGCTATTACTTACGTG GACGTTTACTCTGTGAAGTATGAGCTCATTCGCCATGCAAAATTACACGGTACGTGGATTTTTATATGGTTTAATTTTAGCTTGTGCTTTTGTACTGAAA AATTAATTAGCATGTCTTTATAA
AA sequence Show only first row Show all	>Lus10000185 pacid=23150913 polypeptide=Lus10000185 locus=Lus10000185.g ID=Lus10000185.BGIv1.0 annot-version=v1.0 MAEGLGLPYLSAFLDSVGSNFSHGANSATAGSTVRPPNQTLHQSGFSPVSLNVQSYQFHDFVNHSQIVRARGGVYSKLLPKPEHFARALYTFDIGQNDLT SAYFLNMTTGQVVAQILDVLSQFKAAVKSVYSRGGSYFWIHGTGPIRCLAYVLDRVLTTELDEAGCGVLMNRVAQRYNRGVKRMVRELEVELPFAAITYV DVYSVKYELIRHAKLHGTWIFIWFNFSLCFCTEKLISMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	1.0	0.9412
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	3.5	0.8286
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016665 [exp]	6.7	0.8323
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	7.3	0.8039
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	8.1	0.8527
AT5G06270			unknown protein		Lus10004209 [exp]	11.7	0.8411
					Lus10007128 [exp]	13.0	0.8318
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	15.5	0.8373
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	18.4	0.8277
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	22.6	0.7920

Compare expression of checked genes

Lus10000185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.