Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05270 279 / 2e-85 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 272 / 1e-82 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 256 / 1e-76 Plant protein of unknown function (DUF869) (.1) AT1G19835 158 / 2e-40 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 150 / 5e-38 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 143 / 2e-35 Plant protein of unknown function (DUF869) (.1) AT2G23360 99 / 2e-21 Plant protein of unknown function (DUF869) (.1) AT3G19370 43 / 0.0008 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025674 [exp] 967 / 0 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 901 / 0 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 460 / 6e-154 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 457 / 1e-152 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 190 / 3e-53 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 186 / 8e-52 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 153 / 1e-38 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 152 / 2e-38 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 152 / 2e-38 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178100 [exp] 513 / 8e-176 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 506 / 1e-172 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 346 / 1e-110 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 344 / 8e-110 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 153 / 8e-39 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 150 / 8e-38 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 123 / 4e-29 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 108 / 3e-24 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 103 / 8e-23 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 101 / 4e-22 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10000186 pacid=23150733 polypeptide=Lus10000186 locus=Lus10000186.g ID=Lus10000186.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGGAAATGGCTGTGGAAGAAGAAACCTTCGGAGAGGAGCAATGGAGAAACTGAGAGTTCTGGTTCAATTTCCTCACATTCTGAGAGATGCT CTGATGATCAGGAAGCAATGAAAGCATCTCCCAATGATGAAAGTCAATCTCCTGAAGTTACCTCAAAAACTTCAGCTGTGGATGAAGAAGTCAACGAAAC CATCAAATGCTTGACAGAGAAGTTATCAGCTGCACTCGTGAACATCAGCCAGAAAGACGATTTAGTGAAGCAACACTCCAAAGTTGCTGAAGAAGCTGTT GCAGGATGGGAGAAGGCTGAAAATGACTTGGTAGTTATCAAGGTACAGCTCGAAGCAGCAACACATAAGAAATCTCAACTCGAAGATCGCGTAAGCCATC TTGACGGAGCCTTGAAAGAATGCGTTAGGCAGCTCAGACAAGCACGGGATGAGCAGGAAGGGAAGATACACGAGGCAGTTGCGAGTAAAAGTATAGAATG GGAAGCCATTAAATCCGAACTAGAGAAACAGATTCTTCATCTCAAGACAGAAGCAGAATCTACAAAAAAACCCGAGTCCCCTACTCTTCGAGTCGATCCT GATTTGTATGACAAGCTTGAATATCTAGAACAGGAGAATGAATCGCTGAGGCACGAGCTTCTGTCTCAATCTGAAGAACTAGAGGTCAGAGCAATCGAAA GGGACTTGAGTACTCAAGCGGCTGAATCGGCCAGCAGGCAGCATTTGGAGAGCATAAAGAAGTTGGCCAAGCTCGAAGCTGAGTGCCGAAAGCTAAAGAC TGTAGCTTTTCGATCATCGTCTCCACGTTATGATCATAAAACATCTGCTGCTTCCTCGGTTTATCTCGAGTCTCTTACGACGGATAGCCATTCAGATAGT GGGGATCAAAGGCTCAATGCATTGGATTTGGATACACGAAAAGCGAATAACTTGGACACGTCAGCACTGATTGCTGAACTTGATCAGTTCAAGAATGGGA AAGATTCCAACAGGAATCTACCTGCATCAGCTGTTGAGATTGATCTCATGGACGATTTCCTCGAAATGGAAAGACTTGCTTCAATGGCTGAGACTGAAAG TCGAAGCAATCATGTTGAGTCAGAAGTGGTTGTGAAGCAATCTACTGATGGTGCAGAAAGTGCATTGGGAGTTGAGCACGAGAACGCTATTCGTCATTCG GCTGAATTGGAAATCAAGCTGAGTGAGCTGCAAGGAGTGAAAGATGAACTAGAACGTAGCTTGGAGAACACGAAAGCTGAGAGAGCTGAAGTGGAATCAA GTCTTGTGAGAATGATGGAAGAGAAAGAACAAGTAGAAAGAAGTTTACAAGAAATGATGGCAGACAAATCAAAGATGGAAACTTTCCTAACCAGGAGTCA AGATGAGAATAAGGCAACGGAAAGTCTGCTGAGGGAAGTCCAACTCAAGTTGGAGGGAGTTGAAACTGAGCTGTTATCGGCGAGAGAATCGAGGCAAGAC GTGGAATCTCAACTCTTTGCCTTGGAAGCAGAATGCCGTACGATGTCAGCACAGGTTTCCACCTTGGAAACCGAACTTGAGAAGGAAAAGGCTACGTCTG CCGAGTTAAGCATCAAGTATCTGTACCTGGAGGAAGAACTTTCGAAGAAGAAAGAGGAGATTGAGAACCAACAATCAATGAAGTTGAACAGAGAACCGAA GATTAAACAGGTTAAAGTCCAAAACGTTATCTTTGTTACATTGATTCTCTTTCAGTTCAAAGCTCCAGCGAGGGTCCGACCACCTTCCATGACTAGTAAC AAACGCTGTAACTAG
AA sequence Show only first row Show all	>Lus10000186 pacid=23150733 polypeptide=Lus10000186 locus=Lus10000186.g ID=Lus10000186.BGIv1.0 annot-version=v1.0 MEKRKWLWKKKPSERSNGETESSGSISSHSERCSDDQEAMKASPNDESQSPEVTSKTSAVDEEVNETIKCLTEKLSAALVNISQKDDLVKQHSKVAEEAV AGWEKAENDLVVIKVQLEAATHKKSQLEDRVSHLDGALKECVRQLRQARDEQEGKIHEAVASKSIEWEAIKSELEKQILHLKTEAESTKKPESPTLRVDP DLYDKLEYLEQENESLRHELLSQSEELEVRAIERDLSTQAAESASRQHLESIKKLAKLEAECRKLKTVAFRSSSPRYDHKTSAASSVYLESLTTDSHSDS GDQRLNALDLDTRKANNLDTSALIAELDQFKNGKDSNRNLPASAVEIDLMDDFLEMERLASMAETESRSNHVESEVVVKQSTDGAESALGVEHENAIRHS AELEIKLSELQGVKDELERSLENTKAERAEVESSLVRMMEEKEQVERSLQEMMADKSKMETFLTRSQDENKATESLLREVQLKLEGVETELLSARESRQD VESQLFALEAECRTMSAQVSTLETELEKEKATSAELSIKYLYLEEELSKKKEEIENQQSMKLNREPKIKQVKVQNVIFVTLILFQFKAPARVRPPSMTSN KRCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	1.7	0.8467
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	5.3	0.8663
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	12.5	0.8465
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	13.9	0.8541
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031242 [exp]	13.9	0.7868
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	14.1	0.8021
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	19.3	0.8356
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	20.0	0.8126
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	20.2	0.7703
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	25.8	0.8416

Compare expression of checked genes

Lus10000186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.