Lus10000187 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75010 186 / 2e-53 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
AT1G60890 51 / 6e-07 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
AT1G21980 51 / 7e-07 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
AT2G26420 50 / 9e-07 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1)
AT1G77740 50 / 2e-06 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1)
AT3G09920 49 / 2e-06 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
AT2G35170 49 / 2e-06 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
AT3G07960 49 / 3e-06 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT1G10900 48 / 5e-06 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT4G17080 44 / 8e-05 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035091 610 / 0 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Lus10031930 503 / 1e-174 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Lus10023909 49 / 3e-06 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Lus10014408 49 / 3e-06 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Lus10021505 49 / 3e-06 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Lus10022606 49 / 3e-06 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Lus10018200 49 / 3e-06 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Lus10015456 49 / 4e-06 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Lus10025636 49 / 6e-06 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G099300 276 / 1e-86 AT1G75010 657 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Potri.008G142301 69 / 5e-15 AT1G75010 71 / 1e-16 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Potri.003G019100 51 / 7e-07 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Potri.001G211200 51 / 8e-07 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Potri.005G172800 48 / 8e-06 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.006G121200 47 / 1e-05 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Potri.004G139900 47 / 2e-05 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.002G088100 47 / 2e-05 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.019G015768 46 / 3e-05 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.002G140000 45 / 3e-05 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0251 MORN PF02493 MORN MORN repeat
Representative CDS sequence
>Lus10000187 pacid=23147715 polypeptide=Lus10000187 locus=Lus10000187.g ID=Lus10000187.BGIv1.0 annot-version=v1.0
ATGGGAAACCAGCAATTGAAGGAAAAGGCAGAAATGAACACCGGCAATCTCGCTGAAACAATATATTCGCCAGATGCTACTGCAGAGGGAGATGTGATTC
CCCTGAATGGTATGGCTGATGGAGCTGACACGTGGCATGAGGATGACAATAACACAGTATTTAGTGGACTCGATGAAGATTCTGATTTCAGAGATGGAGG
TGGAAATGAAGATCTGTTAGAAGACTCTTCTGACTTCAATGAACAAATTACTGAAGGCAATATTGCGTTCCAAAGGGAATTGCAACGAAATGGGAACTTG
GGTCTTGGGCATCAGATAGCAGAGAAGTGGGCTAAACAAAGGGCTAGAACTCCGGTTCTTGATAATTTGAGTATCTTTCCCCTTCCAGTTGGCGTGAGGC
GTCCAGAAGAGTTAGGGGACATTCAGGATATCTCATACTTTGAAGAATGGAAAGAGGAGAATGCTCTCCCAGAACAACTTGGTGAGGACCCAAGTGGTTC
TTCATTGGGTGCTTTGACTGATGCTGGTTTTCTAGCTGTGAAGGACTTCTACAGCTATGCTTCTGCCTTGTTGAAGTCCAGAAATGATGAAGCAGCCAGA
AAGCAAGGAGTTCTTTCCGTTCGTGCTGCTTCTGTGCTGGAGTCTGAGCGTGGTTCACCGAGAAAGTGGAGTCCGACAACAGAAATGCACTACAGAGGTG
GACTTTACAAGGGACGATGCCAAGGGGGACTTCCTGAAGGAAAGGGCCGTCTTGTCCTTCATGATGGGAGCATATATGATGGCATGTGGCATTATGGGAA
AAGATCAGGACTTGGGGCTTGTTACTTCAGCAATGGTGATGTCTTCCAGGGTTCATGGAGGGACGATCTTATGCATGGCAAGGTACGCTGCATTTCTTCT
GTCTTCGATCTCATTTACCCTGCTAGCTTTATCTTCATCCAGATTCTCTTTGGTTATGCCCTTTCCTCGAAGGACCTATCTTGA
AA sequence
>Lus10000187 pacid=23147715 polypeptide=Lus10000187 locus=Lus10000187.g ID=Lus10000187.BGIv1.0 annot-version=v1.0
MGNQQLKEKAEMNTGNLAETIYSPDATAEGDVIPLNGMADGADTWHEDDNNTVFSGLDEDSDFRDGGGNEDLLEDSSDFNEQITEGNIAFQRELQRNGNL
GLGHQIAEKWAKQRARTPVLDNLSIFPLPVGVRRPEELGDIQDISYFEEWKEENALPEQLGEDPSGSSLGALTDAGFLAVKDFYSYASALLKSRNDEAAR
KQGVLSVRAASVLESERGSPRKWSPTTEMHYRGGLYKGRCQGGLPEGKGRLVLHDGSIYDGMWHYGKRSGLGACYFSNGDVFQGSWRDDLMHGKVRCISS
VFDLIYPASFIFIQILFGYALSSKDLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Lus10000187 0 1
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Lus10033990 2.4 0.8461
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Lus10035091 3.0 0.8812
AT3G19650 cyclin-related (.1) Lus10011420 9.2 0.8136
AT2G45270 GCP1 glycoprotease 1 (.1) Lus10030285 10.0 0.8541
AT2G04360 unknown protein Lus10016086 13.2 0.8664
AT3G20440 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHI... Lus10003674 14.5 0.8551
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Lus10043251 18.2 0.8406
AT1G31500 DNAse I-like superfamily prote... Lus10000006 18.4 0.7837
AT2G43630 unknown protein Lus10010586 19.2 0.8020
AT5G11580 Regulator of chromosome conden... Lus10038724 20.4 0.8478

Lus10000187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.