Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29350 265 / 9e-81 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 263 / 4e-80 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 122 / 5e-30 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025382 [exp] 598 / 0 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 598 / 0 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 436 / 1e-145 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 419 / 5e-139 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 61 / 7e-10 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 48 / 1e-05 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078800 [exp] 416 / 4e-138 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 400 / 4e-132 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 101 / 9e-23 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 53 / 2e-07 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 42 / 0.0006 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000188 pacid=23173739 polypeptide=Lus10000188 locus=Lus10000188.g ID=Lus10000188.BGIv1.0 annot-version=v1.0 ATGCTTCATACCAAGTTAATTGCTTCCTGTTGCAGAGATCCAGAGTATTATGAGGATGTTCTAAGAAATGCTGCTGAAGATAATTTAGTTCATGGAACTA ATATAAACGTTGGGAACTATGATTCCCCTTCTGTCCCTCAACCACAAGTCTTAAAGGAAGAAACACAGGAAGCTGCTCAGGGAAATCAAGATCCTTTCGT ATCATCTACGCCCGGCTATAATTATGACAACAATCAGCATTTGGATGCTGCACTTAGAAGCCAACAGTCAAGCTCTCAGTTGCAGAATATTGCTGGCTTC TCAAGTGTGATGGCTTATTCAAACTCATTGCCTACTGCATTGCTGGCTTCAAATTTGCCAACTGGGAGGGAGTCTGACCTTCCATACTCACCATTCCCAA CGAATCAATCCATGCCTACGAAGTATAACACTAACGCCTCCGCCGTCAATGGTCCAAGCATTTCCATGCCAGAGGCATTGAGAGCGTCCAACATTTCGAC ACCTCAGCCAACGCAACAGTCACTTGGTGGCGCCGCTGTGGCAGCCATCGGACACACTCTTCCGCAACACCTCGCTGTCCATCCGTATTCCCAAACTGCC CTTCCTTTGGCCCAGTACACCAACATGATCGGCTATCCTTTCTTGCCTCGGAGCTACGCTTATATGCCGTCGGCTTTCCAACAGGCGTTTCCGAGAAACA GTACTTACCACCAGTCTCTGGCAGCTCTTCTCCCTCAGTACAAGAACAGTGTCTCTGTAAGCAGCTTGCCCCAATCTGCTGCTGTCCCACCGGGCTATGG TGGAGCTCCTGCAGGGAGTTCCCCTCATAATCAGCCTGCTGCCCCGGTCGGCAATACTTTTCGGTATGAGGATGTGCTGAACTCCCAGTACAAAGATACC AACCATTTGATGTCTCTGCAACAGAACGAGAATTCGGCGATGTGGCTTCAGGGGCATGGCTTGCGAACCATGTCAGCAGGCCCGGCTAACTCATATTACA ACTTCCAGGGGCAGAACCAGCCACAACAGCAACCGCCCTCAGAGTTTCGTCAAGGTCAACAACAACAACAACAACCATCACAGCAGCATTTCAGTGCTCT TGGGTACCCAAACTACTACCATCCCCAGCCCGGCATGTCACTCGATCACCAGCAACAGCAGAACACACGTGACGGATCTATGGCCGTCATGCAAGGCCAG GGTGGAAAGCAGCAGACCCAGCAACAGTTATTGCAAAACAGCTACTAA
AA sequence Show only first row Show all	>Lus10000188 pacid=23173739 polypeptide=Lus10000188 locus=Lus10000188.g ID=Lus10000188.BGIv1.0 annot-version=v1.0 MLHTKLIASCCRDPEYYEDVLRNAAEDNLVHGTNINVGNYDSPSVPQPQVLKEETQEAAQGNQDPFVSSTPGYNYDNNQHLDAALRSQQSSSQLQNIAGF SSVMAYSNSLPTALLASNLPTGRESDLPYSPFPTNQSMPTKYNTNASAVNGPSISMPEALRASNISTPQPTQQSLGGAAVAAIGHTLPQHLAVHPYSQTA LPLAQYTNMIGYPFLPRSYAYMPSAFQQAFPRNSTYHQSLAALLPQYKNSVSVSSLPQSAAVPPGYGGAPAGSSPHNQPAAPVGNTFRYEDVLNSQYKDT NHLMSLQQNENSAMWLQGHGLRTMSAGPANSYYNFQGQNQPQQQPPSEFRQGQQQQQQPSQQHFSALGYPNYYHPQPGMSLDHQQQQNTRDGSMAVMQGQ GGKQQTQQQLLQNSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	0	1
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	1.0	0.8411
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	3.5	0.8009
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	5.9	0.7885
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	6.0	0.8102
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	6.0	0.7936
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	7.4	0.7910
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	10.2	0.7543
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	11.2	0.7287
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	14.1	0.7313
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	15.1	0.7388

Compare expression of checked genes

Lus10000188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.