Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 127 / 2e-32 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 93 / 2e-20 F-box family protein (.1) AT4G22390 80 / 4e-16 F-box associated ubiquitination effector family protein (.1) AT3G16210 73 / 7e-14 F-box family protein (.1) AT3G23880 66 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT1G53550 63 / 1e-10 F-box family protein (.1) AT5G10340 63 / 2e-10 F-box family protein (.1) AT4G38870 58 / 5e-09 F-box and associated interaction domains-containing protein (.1) AT5G65850 55 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT1G11270 52 / 3e-07 F-box and associated interaction domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031478 [exp] 903 / 0 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 903 / 0 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 321 / 1e-106 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10010910 [exp] 313 / 1e-103 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10040463 [exp] 278 / 7e-90 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10043335 [exp] 238 / 2e-76 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040338 [exp] 144 / 6e-39 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027028 [exp] 126 / 3e-34 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10025893 [exp] 110 / 6e-28 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010800 [exp] 127 / 1e-32 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 122 / 2e-30 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 107 / 2e-25 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 106 / 5e-25 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 106 / 5e-25 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 105 / 1e-24 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G137200 [exp] 96 / 2e-21 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.016G012700 [exp] 85 / 8e-18 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 83 / 4e-17 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037312 [exp] 82 / 7e-17 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10000190 pacid=23178706 polypeptide=Lus10000190 locus=Lus10000190.g ID=Lus10000190.BGIv1.0 annot-version=v1.0 ATGTCAGACCTCATTCCACCAGAAATCTTGGCCAACATTCTGCTCCGAGTCGGGACAAACCATCTCGTCTATTGCAGGAGCGTATCGAAGCAGTGGCTCT CAATAATCGACGACCCTCAATTCATCCGCAACCAACTCGAGTATTCCGCAAACTCTTCCAACTCTGCCCTTTTCCTCCAAGACCGCGCATTAACTAAAGT ATTCTACTGGAATAGCCATGCAATCAGCAGCGGCAACGGCAGCTTCTTCTCGACCCCGCCGATGCGTTACAAGCCCACCCAGAAACTGGTGTTGACTGGT TCTTGTCACGGCTTGTTATGCTTTTCACTTTCCAAGCATCCACACGCAGATTTCGTAATACTTAACCGGTCAACAGGGGAGCGGCACACACTTAAAACAA CCAATCCCTCAAAGGAATTAGATGACAATAGCCAGGTGGTAGCGCGTGGTTTCGGGTATGACGAATTGTCAGACGATTACAAGGTGGTCAGGATTTTAGT AACAATTCCTGTTGATCCCAACATTATTAATGGTTCCTACATTGCTGAAATTTATGGGGTCAGGTCCAAGGGTTTCTTCAGGAGCATTACTTTGCCCGCT TCAGAATGGAACTTAAACAGCTACATCGGTAAATCCATCGGGGTGTTTTTCGGCACCTCGTTGCATTGGGCTGATAAGAACCCTAGTCATACTGAAGATG CGATTCATGCGATTGATCTTGTGTCCAACACCTATCGCAAGCTGCAGTTTCCCCAAATTACCAGCAATAGTTTCGGTCAGATTTGGGGTAGTTTCTCCGT GGGCATTGTAGACAGGCGGTTGTGCATTTTGTGTGTCCTTAAGCATGAGAGGGAAGTTGGCATGATCTGGGTTATGGAGGAGTACGGGAATCGCGAATCG TGGAATAGGATTTACTGCATTCGGAATGCTTTTTCGGGGTATCCTTGGTCGTATCCACCAGCCTGCCTGGGGAAGCATGCAGATAAAGTTATATTGATGA TTAATCCTCAAAGACTTGCTTGGTTTGATGCAACGAAGAAGAATGCGGATGGAAGTTCTTGCTTGACGATTGATGAAAAGATTTGCTATGATTTCCAAGA AGCAATTTGGTGTCAGGACAGTCTCGTGAAGATATTTCCAAAAGAGGAGGATGCGCAATTGCCAAATGATGTGAAGAAGGAGGATGCTTATGATAAGAAG CGTGCCAAACATATATGGTCGATGATGAAGAAATTCCACAGAAGAATAGTTGCCCGACTTTCCTCCCAAATGATTTGCTGCGCTATCTCGAAGCAGTAA
AA sequence Show only first row Show all	>Lus10000190 pacid=23178706 polypeptide=Lus10000190 locus=Lus10000190.g ID=Lus10000190.BGIv1.0 annot-version=v1.0 MSDLIPPEILANILLRVGTNHLVYCRSVSKQWLSIIDDPQFIRNQLEYSANSSNSALFLQDRALTKVFYWNSHAISSGNGSFFSTPPMRYKPTQKLVLTG SCHGLLCFSLSKHPHADFVILNRSTGERHTLKTTNPSKELDDNSQVVARGFGYDELSDDYKVVRILVTIPVDPNIINGSYIAEIYGVRSKGFFRSITLPA SEWNLNSYIGKSIGVFFGTSLHWADKNPSHTEDAIHAIDLVSNTYRKLQFPQITSNSFGQIWGSFSVGIVDRRLCILCVLKHEREVGMIWVMEEYGNRES WNRIYCIRNAFSGYPWSYPPACLGKHADKVILMINPQRLAWFDATKKNADGSSCLTIDEKICYDFQEAIWCQDSLVKIFPKEEDAQLPNDVKKEDAYDKK RAKHIWSMMKKFHRRIVARLSSQMICCAISKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	0	1
					Lus10024618 [exp]	1.0	0.9791
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	2.6	0.9474
					Lus10025954 [exp]	3.5	0.8679
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	4.0	0.9502
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10042999 [exp]	4.7	0.8831
					Lus10010697 [exp]	4.9	0.9502
AT5G20610			unknown protein		Lus10025003 [exp]	5.7	0.9502
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041614 [exp]	6.2	0.7745
					Lus10008327 [exp]	6.3	0.9502
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	6.5	0.7599

Compare expression of checked genes

Lus10000190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.