Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21195 75 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041068 [exp] 226 / 2e-77 AT2G21195 97 / 5e-27 unknown protein Lus10006157 [exp] 108 / 3e-28 AT5G09360 533 / 0.0 laccase 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071800 [exp] 128 / 6e-39 AT2G21195 99 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000194 pacid=23168781 polypeptide=Lus10000194 locus=Lus10000194.g ID=Lus10000194.BGIv1.0 annot-version=v1.0 ATGGAGCCGTCAAATTCAAAACTCGCCATAGCCGTTCCTTCGAGACGGCCTTCCAGGCGGCTCTTGTTCGATCGTCGCTATGGATGGGTGGTGGATGAAT GGAAGCACCCATCAGAGGAAGCTTTGGCCGGCGGCCGTGGAATGTTCTGCATAGTGCCCCTAGCAAAAGCATTCTGGAATATGGCTTCCAAGTCGATAGA AGCTGCATCAAATTGTGTAGTCGAAGTTGTTCAAAGGCCAGATATTTTGTCTCCTCAGGCAATTCAGGCGAATCTGAAAACTCAGCTGTCCAGATTCCAG TCATCCCTGCGCAACCCTGAGCTCAACCTGCTTGTAAGAAACTCGAAATCCCATTCTCCTGAATTGCCAAATTCACATGTAAAATTGGAGAACAATGTAG CACAGACAAATTAA
AA sequence Show only first row Show all	>Lus10000194 pacid=23168781 polypeptide=Lus10000194 locus=Lus10000194.g ID=Lus10000194.BGIv1.0 annot-version=v1.0 MEPSNSKLAIAVPSRRPSRRLLFDRRYGWVVDEWKHPSEEALAGGRGMFCIVPLAKAFWNMASKSIEAASNCVVEVVQRPDILSPQAIQANLKTQLSRFQ SSLRNPELNLLVRNSKSHSPELPNSHVKLENNVAQTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21195			unknown protein		Lus10000194 [exp]	0	1
AT1G26750			unknown protein		Lus10016383 [exp]	13.0	0.7447
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023484 [exp]	24.4	0.7477
AT4G04614			unknown protein		Lus10014685 [exp]	54.0	0.7065
AT1G16810			unknown protein		Lus10033383 [exp]	62.5	0.7138
AT3G62810			complex 1 family protein / LVR...		Lus10021599 [exp]	122.4	0.6613
AT2G17240			unknown protein		Lus10043214 [exp]	150.1	0.6452
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	152.5	0.6658
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	214.5	0.6502
AT2G43780			unknown protein		Lus10035718 [exp]	216.3	0.6465

Compare expression of checked genes

Lus10000194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.