Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15130 242 / 2e-80 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G32260 232 / 4e-76 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT2G38670 57 / 2e-09 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036229 [exp] 340 / 3e-119 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 335 / 5e-117 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 240 / 4e-79 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 239 / 1e-78 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 226 / 3e-73 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 194 / 2e-62 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10021592 [exp] 58 / 7e-10 AT2G38670 505 / 4e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 58 / 7e-10 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10027604 [exp] 57 / 2e-09 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159400 [exp] 286 / 6e-98 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 276 / 1e-93 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 246 / 1e-81 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 246 / 2e-81 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 59 / 5e-10 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 57 / 2e-09 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 52 / 5e-08 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 52 / 6e-08 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10000195 pacid=23168780 polypeptide=Lus10000195 locus=Lus10000195.g ID=Lus10000195.BGIv1.0 annot-version=v1.0 ATGATGGAGATTGCTCTGCCTATTGATTTGAGCTCTGGTGTAAAATGGGTTTGGCCATTTGGGTTCCCGAATACTTACCTGTTGGTTGGATGCTGCAACG ATGAACTCACCCACAAGTTCAAGGGTAAAACTGTCATGACCGATGAAGAGCGATACGAATCCCTCAGACATTGCAGGTGGGTTGATGAGGTCATTCCTGA TGCACCATGGGTTGTCACACAAGAGTTCCTCGATAAACATCAGATCGATTACGTGGCTCACGACTCCCTTCCCTATGCTGATGCAAGTGGTGCTGCAAAT GATGTCTATGATTTTGAAAAGCGCCTGAGAGTGAACATGGGTCTTAAAAGGTTGCGCGAGAATGTGAAGAAGCATCGAGAGATTGTCGAAGAAAAGATAC AAGTAGTGGCTAAAACTGCACGGGTGCATCGGAATGAATGGGTGGATAATGCAGATCGGTTGGTAGCCGGATTTCTCGAAATGTTTGAGGAAGGATGCCA TAAAATGGGAACAGCGATCAAACAGCGATTGACGAAACAGCAATTGATGGCAATCATTTATGACAGAGAAGGCGTCACTGATGATGAGGATGAAGACGAC GAGGAGTACTACTTCGATGACTATGAAGACGACTCGGCAGATGAATAG
AA sequence Show only first row Show all	>Lus10000195 pacid=23168780 polypeptide=Lus10000195 locus=Lus10000195.g ID=Lus10000195.BGIv1.0 annot-version=v1.0 MMEIALPIDLSSGVKWVWPFGFPNTYLLVGCCNDELTHKFKGKTVMTDEERYESLRHCRWVDEVIPDAPWVVTQEFLDKHQIDYVAHDSLPYADASGAAN DVYDFEKRLRVNMGLKRLRENVKKHREIVEEKIQVVAKTARVHRNEWVDNADRLVAGFLEMFEEGCHKMGTAIKQRLTKQQLMAIIYDREGVTDDEDEDD EEYYFDDYEDDSADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15130		ATCCT2	phosphorylcholine cytidylyltra...		Lus10000195 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10036229 [exp]	1.0	0.9603
					Lus10009048 [exp]	2.4	0.8647
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	5.1	0.8651
AT4G04480			unknown protein		Lus10015548 [exp]	9.3	0.7862
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	13.0	0.8489
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	16.6	0.8292
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039992 [exp]	21.4	0.7905
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	21.6	0.8289
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	22.4	0.8378
					Lus10029977 [exp]	23.9	0.8597

Compare expression of checked genes

Lus10000195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.