Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 169 / 5e-46 SLK2 SEUSS-like 2 (.1.2) AT4G25520 166 / 3e-45 SLK1 SEUSS-like 1 (.1) AT4G25515 163 / 3e-44 SLK3 SEUSS-like 3 (.1) AT1G43850 137 / 4e-35 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006324 [exp] 711 / 0 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10029594 [exp] 538 / 0 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 168 / 2e-45 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10042785 [exp] 141 / 3e-36 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 139 / 2e-35 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 133 / 1e-33 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10015002 [exp] 123 / 2e-30 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10018933 [exp] 99 / 2e-22 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121800 [exp] 198 / 7e-57 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 176 / 2e-48 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.012G136100 [exp] 175 / 5e-48 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 148 / 1e-38 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 142 / 8e-37 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 140 / 5e-36 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 78 / 2e-15 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 61 / 8e-11 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000198 pacid=23156629 polypeptide=Lus10000198 locus=Lus10000198.g ID=Lus10000198.BGIv1.0 annot-version=v1.0 ATGCATGGCACTGTGAGCTATGTGGTTCTACATCTGGAAGAGGCTTCGTCTTCTTCACTGGCAGAGGCATCCTTTGAAGTTCTCCCAAGGCTCACCAAGA CACAGTTCGAGACCGGAGTTACAGATGAACTTTTATACCTCGACTTTCCTCAAGAGTGTAGGCTCCTTTCTGGATCAATGGTCCTGGAATATGGAAAAGC AGTGCACAAGACAGTCTACAATCAGTTCCATGTCGTGCGTGAGGGCAAACTACGGATTATATTCACTCAAGATCTAAAGGTTAATGATTTCATCCGTACT GCACAGAAGTATCAGAAAGCAATTGATGGTGGTGGACGAGGAAGTACCCCTTCTAATCTACGAGAAAATGGCAATGTGTTGTTGGCAGCTGGATGCAGTC TTGAGCGAAGTTTCGAATCGCAGCTTGCTGGCGACATAGGTTTTCCTAAGCGATACATCCGATGCTTGCAGATTGCTGAAATAGTCAATAGTATGAAAGA CTTGATGACTTTCAGTTGCCAGAACAAAATTGGAGCTATAGAGAGTTTGAAGACTTACACTGAGAAGTTCTCAGCGAACATCCAGGAACCAAACGAGGAA TGTGACATGCTGACCAAGGATGACCGCATAAGCAAGGGAAAAGGTAGAGTCTTTACCACAACCGAAGAGGCAGCTTTGGCTGATTATGGAAGTTACATGA AATTACTGAGTCGAGCATCCGATCATAATGTAGCTGGATTCGCAGAACCTTCTTATCTATACAAACAGTTCAATCAAGGTTCTCAGACATCGGTCCCAGA GTTCATCCAAAACGTCCCTTCCTCAAACTACCCTACCTCTGAGAGCAACATCATACAAGAGCATATGATGAAGATACTACAGAGAGCAAGCACCAAGAGC CAGAACACAGGTTGGACCGAGAGAGAAGTGGTAAACAACACAATGGACGACATGTTTGCTGGTTTGCCAACAACATATAGTTCCTGGAATAGGCTGCCTT CTGATCACTCATCATCAGCACAGAACTGTACCGCTGCCAGCAGCTGGGAGTCCTCGAGTGATCGTAGTTTCATCAACAAGGGAAGCAACCATGTCGAAAC TCTTAATCATCAGTCCGAGGAATACGGAGCTTTCCGCAAGCTATTGGAGAACAGTATGTCTGATGGTTCATTTGGGGACTCCACAAGCTTCGGTTGGAAG GGATGA
AA sequence Show only first row Show all	>Lus10000198 pacid=23156629 polypeptide=Lus10000198 locus=Lus10000198.g ID=Lus10000198.BGIv1.0 annot-version=v1.0 MHGTVSYVVLHLEEASSSSLAEASFEVLPRLTKTQFETGVTDELLYLDFPQECRLLSGSMVLEYGKAVHKTVYNQFHVVREGKLRIIFTQDLKVNDFIRT AQKYQKAIDGGGRGSTPSNLRENGNVLLAAGCSLERSFESQLAGDIGFPKRYIRCLQIAEIVNSMKDLMTFSCQNKIGAIESLKTYTEKFSANIQEPNEE CDMLTKDDRISKGKGRVFTTTEEAALADYGSYMKLLSRASDHNVAGFAEPSYLYKQFNQGSQTSVPEFIQNVPSSNYPTSESNIIQEHMMKILQRASTKS QNTGWTEREVVNNTMDDMFAGLPTTYSSWNRLPSDHSSSAQNCTAASSWESSSDRSFINKGSNHVETLNHQSEEYGAFRKLLENSMSDGSFGDSTSFGWK G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	5.9	0.7784
AT3G27390			unknown protein		Lus10022317 [exp]	10.8	0.7655
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	13.9	0.7129
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	14.1	0.7637
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	16.7	0.6108
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	22.2	0.7584
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	24.4	0.6764
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	24.7	0.7341
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	26.5	0.6600
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	28.1	0.7520

Compare expression of checked genes

Lus10000198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.