Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19895 352 / 2e-119 RING/U-box superfamily protein (.1) AT3G12940 87 / 3e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G40640 74 / 6e-15 RING/U-box superfamily protein (.1.2.3) AT5G05230 68 / 6e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034201 [exp] 493 / 4e-174 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10002543 [exp] 84 / 5e-18 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034237 [exp] 56 / 1e-08 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1) Lus10029029 [exp] 53 / 9e-08 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1) Lus10027382 [exp] 48 / 4e-06 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085700 [exp] 381 / 2e-130 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 373 / 3e-127 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1) Potri.011G143000 [exp] 88 / 1e-19 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G058300 [exp] 79 / 2e-16 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000199 pacid=23161715 polypeptide=Lus10000199 locus=Lus10000199.g ID=Lus10000199.BGIv1.0 annot-version=v1.0 ATGGCTGTTGAAGGAGGAGCAAAATCTTCTGCGAACAGTGAAGTTGAGAAAGGGCTGATAACATTGATTTCGTCAGACAGTCCTGGGCTTGAGGTTTGTG ACCCTAATGGCCGCTGGTACCTAGCTGATCGTGGTTTTTCTCCAGGTGATCTTTTGTTGATTACTGGCAAGGCACTTAGCCAAGCCACGGCTGGCCTTCG TCCTGCTTCTTCATATAGAGCTACTTCTGATCAGTTATCTTCCATGAATGGCAGTGGAAGGACATCGTTGGCATTTCGACTAATGCCCCAGGCAAATGCT GTATTGGATTGTTCTCCTATTGCAGCAGCCGGCCATGTCATTCCTCAGAGCTATGTCCCTGTATCTGTTAGTCAATTTATGGATCACCTTTCTACTGATG ACGCTGTTATGTCTGATCGGCCTGAGAATGACAATGTTGTTCTCAATAGCTCTAACAAGGAGCCGTCATTGAGAAGTATCCTCTCGGATCCATTGTCGGG TGCATTCCTTGAAGATGCAATGTACGCTTCTTGTGGACATTCATTCGGTGGTCTAATGCTCAGTAGAGTCCTCGAATTGTCAAGGTGTACCCTCTGCAAT GCGCAAATCGAATCGGGATCATTGATTCCTAATCTAGGTCTTAGAGCTGCAGCTTCAGCTGTCAAACTTGAAGATGACCGGAGGCTATTCCATAATTCAT CTCTACGAAAGCGTCGCAAGGACATAGGCGATCAACCAGATTCTATTAGAAGACAACACAGGGTATTACTTGCTCCCGGATCGTCTCTGGCCAGTTGA
AA sequence Show only first row Show all	>Lus10000199 pacid=23161715 polypeptide=Lus10000199 locus=Lus10000199.g ID=Lus10000199.BGIv1.0 annot-version=v1.0 MAVEGGAKSSANSEVEKGLITLISSDSPGLEVCDPNGRWYLADRGFSPGDLLLITGKALSQATAGLRPASSYRATSDQLSSMNGSGRTSLAFRLMPQANA VLDCSPIAAAGHVIPQSYVPVSVSQFMDHLSTDDAVMSDRPENDNVVLNSSNKEPSLRSILSDPLSGAFLEDAMYASCGHSFGGLMLSRVLELSRCTLCN AQIESGSLIPNLGLRAAASAVKLEDDRRLFHNSSLRKRRKDIGDQPDSIRRQHRVLLAPGSSLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	2.6	0.8730
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	10.0	0.8555
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	15.3	0.7958
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	18.5	0.8184
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	21.2	0.8028
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031181 [exp]	22.2	0.8551
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	25.1	0.8525
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	27.6	0.7940
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	30.0	0.7658
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	31.0	0.7932

Compare expression of checked genes

Lus10000199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.