Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55090 719 / 0 carbon-nitrogen hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017307 [exp] 822 / 0 AT1G55090 1306 / 0.0 carbon-nitrogen hydrolase family protein (.1) Lus10003203 [exp] 814 / 0 AT1G55090 1303 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087400 [exp] 754 / 0 AT1G55090 1274 / 0.0 carbon-nitrogen hydrolase family protein (.1) Potri.003G143700 [exp] 748 / 0 AT1G55090 1291 / 0.0 carbon-nitrogen hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF02540 [flax] [poplar] NAD_synthase NAD synthase
Representative CDS sequence Show only first row Show all	>Lus10000200 pacid=23165870 polypeptide=Lus10000200 locus=Lus10000200.g ID=Lus10000200.BGIv1.0 annot-version=v1.0 ATGATTCTCTCTAACCCCATGAAGATCAGCTATCACTGTCCTGAGGAGGAAATAGCATTTGGCCCCGGTTGCTGGCTATGGGATTATTTGAGAAGAAGTG GAGCTTCTGGATTTTTGCTTCCTCTTTCTGGCGGAGCAGACAGCTCCTCTGTAGCGGCCATAGTTGGTTGCATGTGCCAACTTGTTGTAAAAGACATTGC AAACGGAGATGAGCAAGTTAAAGCTGACGCGATCCGCATTGGACACTACACGGATGGCCAGTTTCCCACCGACAGCAAAGAATTTGCGAGGCGTATATTT TACACGGTGTTTATGGGAACTGAAAATAGTTCTGATGCTACGAGAACCCGGGCAAAGGTGCTAGCAGATGAGATAGGTTCATGGCATCTTGATGTTTCGA TAGATGGGGTTATATCTGCATTACTTTCCTTGTTTCAAACCCTTACAGGAAAGCGACCACGCTATAAGGTAGATGGCGGTTCGAATATCGAGAACCTAGG TCTGCAGAATATTCAAGCTCGGTTAAGAATGGTACTTGCATTCATGTTAGCCTCACTACTGCCATGGGTTCACAGTAAACCTGGATTCTACCTCGTTTTG GGTAGCTCGAATGTTGATGAAGGCTTGCGAGGTTATTTGACTAAGTATGATTGCAGCTCAGCGGATATAAATCCGATTGGGAGTATAAGTAAGCAGGACC TTCGGTCATTCCTACGATGGGCTGCTAAAGATCTTGGCTATTCATCCTTGGCGGAAATTGAAGCAGCTCCACCAACAGCTGAATTAGAGCCTATACGCTC AAACTATAGCCAGCTTGATGAAGTGGACATGGGAATGACCTACGAGGAGCTCTCAGTCTACGGTAGATTGCGAAAGATTTTCCGTTGCGGACCAGTTTCG ATGTTCAAGAATCTTTGCTACAGATGGGGATCAACATTAACCCCATTAGAAGTGGCAGACAAAGTGAAACACTTCTTCAAGTACTACTCCATTAATCGAC ACAAAATGACGGTCTTAACTCCATCATACCACGCCGAGAGTTATTCGCCAGAGGACAACAGGTTCGACCTCCGCCAATTCCTCTACAATGCGAGGTGGCC ATATCAGTTCCGGAAAATCGACCAGCTTGTCGAGGAACTAAACGGTGACAAAGTTGCCTTTGAAGGGAAGCCGGTAGGAATGGGAGTAGTTGGTTCAAGC TCTGGAGATCCAAAAGCTGGGTTTTAA
AA sequence Show only first row Show all	>Lus10000200 pacid=23165870 polypeptide=Lus10000200 locus=Lus10000200.g ID=Lus10000200.BGIv1.0 annot-version=v1.0 MILSNPMKISYHCPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIANGDEQVKADAIRIGHYTDGQFPTDSKEFARRIF YTVFMGTENSSDATRTRAKVLADEIGSWHLDVSIDGVISALLSLFQTLTGKRPRYKVDGGSNIENLGLQNIQARLRMVLAFMLASLLPWVHSKPGFYLVL GSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRSFLRWAAKDLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVS MFKNLCYRWGSTLTPLEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDQLVEELNGDKVAFEGKPVGMGVVGSS SGDPKAGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	0	1
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	3.3	0.6863
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	9.9	0.6446
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	14.8	0.6726
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	21.2	0.6228
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	27.2	0.6033
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	34.5	0.6412
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	34.6	0.6287
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	34.8	0.6173
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	43.4	0.6293
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	46.1	0.6298

Compare expression of checked genes

Lus10000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.