Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03050 53 / 7e-09 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 51 / 2e-08 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 42 / 6e-05 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 40 / 0.0003 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020824 [exp] 94 / 3e-23 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 93 / 1e-22 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10002920 [exp] 45 / 4e-06 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10001502 [exp] 45 / 5e-06 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 39 / 0.0004 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 39 / 0.0005 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118100 [exp] 72 / 2e-15 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 50 / 1e-07 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 48 / 5e-07 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 47 / 7e-07 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 44 / 6e-06 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000201 pacid=23142391 polypeptide=Lus10000201 locus=Lus10000201.g ID=Lus10000201.BGIv1.0 annot-version=v1.0 ATGTCTAGTGTGGGTGGGTACGGAAGAGTGAGTGGAAGTGCTAGCAGTGTTGCACTTGGTTCAGCTGGTAGACCTGCAATGCTTGCTTTACCTGCCCCTC CAACATCGTCGAATTACTCGTGCGGTGGGTTTTCGGACCCTTTTGCAGCATCGATTGCGGTGCCCCCACCACCGTATGTGCAGATGTCAGAGATGGAGAG GAAGCAACAATTATTGATGGAGGAACAACTAATGTGGCAACAATATGCAAAAAATGGTATGCAAGGGCATGTTGGGTTTGTTAACGTAAAACAACAGAAT ACTTGCAACTTCCAACATAATACTTGCAACTTCAACATAATACTTACAACATACAAAATACTGGGACATACCCATACACACGGGGCTTACCACTTTGTTT GA
AA sequence Show only first row Show all	>Lus10000201 pacid=23142391 polypeptide=Lus10000201 locus=Lus10000201.g ID=Lus10000201.BGIv1.0 annot-version=v1.0 MSSVGGYGRVSGSASSVALGSAGRPAMLALPAPPTSSNYSCGGFSDPFAASIAVPPPPYVQMSEMERKQQLLMEEQLMWQQYAKNGMQGHVGFVNVKQQN TCNFQHNTCNFNIILTTYKILGHTHTHGAYHFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	0	1
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	6.1	0.8427
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10042791 [exp]	10.5	0.7688
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	13.2	0.8023
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	14.7	0.7273
					Lus10013963 [exp]	15.6	0.7919
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	15.9	0.7536
					Lus10025503 [exp]	16.7	0.7822
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	25.5	0.7657
					Lus10007508 [exp]	27.5	0.7657
AT1G04670			unknown protein		Lus10004041 [exp]	29.4	0.7657

Compare expression of checked genes

Lus10000201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.