Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03050 115 / 5e-31 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 96 / 3e-24 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 77 / 1e-17 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G05020 66 / 2e-13 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 56 / 4e-10 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT5G57200 50 / 4e-08 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 48 / 2e-07 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 42 / 3e-05 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 41 / 6e-05 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 40 / 0.0002 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012686 [exp] 100 / 9e-26 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 98 / 1e-24 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 80 / 2e-18 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 79 / 3e-18 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10029998 [exp] 59 / 5e-11 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 59 / 7e-11 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 51 / 2e-08 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 50 / 4e-08 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034431 [exp] 47 / 7e-07 AT1G68110 309 / 2e-102 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118100 [exp] 121 / 2e-33 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 77 / 2e-17 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.002G224500 [exp] 64 / 6e-13 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 61 / 1e-11 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G026900 [exp] 57 / 1e-10 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 57 / 2e-10 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 56 / 6e-10 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.T125107 [exp] 52 / 1e-08 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 50 / 6e-08 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 49 / 2e-07 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10000202 pacid=23142392 polypeptide=Lus10000202 locus=Lus10000202.g ID=Lus10000202.BGIv1.0 annot-version=v1.0 ATGGCTCCTAGCAAGGTACGACGTGGCACCCATATCCTCAACCTCTCCGACTTTGTTGATTCCAGGTCCGACTCTTGGGACTACTCTGCTTTTGTCATGA CATATACTATGTACCTTGATGAGCGGTTGGAGTTGATGATTGGGAGGAGAGGGAAGAGAAGCGCCTTCAGGTTTGAGGATGAGGAGGACAAAGGGAGTCC CGATGATGGTTGTGCTGTTGCTGCAAGGGTGACACCGCTTTGTGTGATTAAGTATGAAAAGTGGTTCTCTAGAGTTCAACATTTCCAGCATTTGCTTGAC AGGTTTCTGGCTTGTCTGCCGACAGGTTCGTCTTTCGCTATGGAAATTTGGTTAACATTTGCGGAATGA
AA sequence Show only first row Show all	>Lus10000202 pacid=23142392 polypeptide=Lus10000202 locus=Lus10000202.g ID=Lus10000202.BGIv1.0 annot-version=v1.0 MAPSKVRRGTHILNLSDFVDSRSDSWDYSAFVMTYTMYLDERLELMIGRRGKRSAFRFEDEEDKGSPDDGCAVAARVTPLCVIKYEKWFSRVQHFQHLLD RFLACLPTGSSFAMEIWLTFAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000202 [exp]	0	1
AT1G29195			unknown protein		Lus10002327 [exp]	1.0	0.9012
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	15.2	0.8581
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10035583 [exp]	19.3	0.8547
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	19.7	0.8577
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	22.6	0.8281
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	23.5	0.8365
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	23.7	0.8161
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	24.1	0.8405
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	31.6	0.8229
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	32.9	0.8363

Compare expression of checked genes

Lus10000202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.