Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03240 562 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 562 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 515 / 9e-178 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 511 / 2e-176 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 500 / 9e-172 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 492 / 7e-169 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 482 / 4e-164 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 443 / 2e-149 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 443 / 6e-149 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 263 / 5e-80 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030440 [exp] 806 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 655 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 591 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 567 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 567 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 563 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 484 / 9e-171 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 380 / 7e-127 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 296 / 2e-97 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 575 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 563 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 557 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 544 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 511 / 8e-176 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 509 / 6e-175 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 353 / 1e-114 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 267 / 1e-81 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G069000 [exp] 263 / 2e-80 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 259 / 2e-78 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10000203 pacid=23180234 polypeptide=Lus10000203 locus=Lus10000203.g ID=Lus10000203.BGIv1.0 annot-version=v1.0 ATGTTTCAGCAGGTTACGAAGCTGATGGAGAGGGTAGAAGCGACATTCATCAAGCATTTCTCGAATGCGAACCGCACCAAAGGGATGAACATCTTGAGGC CAACAGCTAAAAGAGAAAGGCACAGGACAACATTCACCATGGGTTTCCTCTCTGGATGCACTGCAGCACTACTAATAGCACTAGTACTGATCGCCAGAGC TAGGAAGATAATGCTCGAGCCCGGGCAAGAGCTCTACATGCAAACAATGTTTCCACTTTATAGCTTGTTTGGATTCATTGTTCTGCACATAGTCCTCTAT GCTGCAAACATTTACTTCTGGAGGCGATACCGGGTGAACTATTCCTTCATTTTCGGGTTCAAACCCGATAATGAGTTAGGATACCGACAAGTATTCCTTG TGGCTTCCGGTATTGCAGTCCTGGCACTTGTCGGTATACTCTCGAATCTCGACATGGAAATGGACAAAGTGACCAAGGATTTCCAAGCCTTGACTGAGCT AATCCCTCTCGGCCTTGTTACTCTACTTCTGGTGCTGTTGTTCTTGCCTTTGAACATCCTGTATCGGCCAGCTCGATTCTTCTTCCTCACTTGCGTCCTC CACTGCATCGCTGCTCCGCTCTACAAGGTGCAAGCCATTAGGAGTTTGGAGTTCTACGTCTGTTATTACGGCTGGGGAGACTTTACACGCAGGAAGAACA CCTGCACAAAAAACGATGTATACGAAACCTTCAACTTCATTGTCGCGGTGATTCCATACATGGTGCGTCTTCTCCAGTGCCTTCGCAGGATGTTCGAAGA GAAAGATAGGATGCAAGGGGTCAACGGGTTGAAGTACCTCGTGACGATAGTAGCAGTCACGTTGAGAACCGCCAACGACAGGTTCATTTGGGCAGCTAGG CTATTCTCAGCCGCTGCAGCCATTGGCGGAACGTACTGGGACCTTGTTTACGACTGGGGTCTGCTTCAGCGAGGTTCGAAGAACCGGTTGCTTCGGGACA AGCTCCTCGTCCCACATAAGAGTGTCTATTACATTGCAATGGTGAGTCCGGAATTTATTGGTTGTTTGGATGAGGTGCTCAATGTGTTGCTGAGATTCGC ATGGGTGCAGACGGTGGTGAACTTTGACTTGAAGTTCCTACACGAGAAAACTATAGTCGCCATCATTGCGAGCTTGGAGATCATACGCCGTGGCATCTGG AACTTCTTCCGGCTGGAGAACGAGCATCTTCACAATGTAGGCAAGTACAGAGCGTTCAAATCGGTACCGCTGCCTTTCAATTACGACGAAGATGATGACA AAGACGATTAG
AA sequence Show only first row Show all	>Lus10000203 pacid=23180234 polypeptide=Lus10000203 locus=Lus10000203.g ID=Lus10000203.BGIv1.0 annot-version=v1.0 MFQQVTKLMERVEATFIKHFSNANRTKGMNILRPTAKRERHRTTFTMGFLSGCTAALLIALVLIARARKIMLEPGQELYMQTMFPLYSLFGFIVLHIVLY AANIYFWRRYRVNYSFIFGFKPDNELGYRQVFLVASGIAVLALVGILSNLDMEMDKVTKDFQALTELIPLGLVTLLLVLLFLPLNILYRPARFFFLTCVL HCIAAPLYKVQAIRSLEFYVCYYGWGDFTRRKNTCTKNDVYETFNFIVAVIPYMVRLLQCLRRMFEEKDRMQGVNGLKYLVTIVAVTLRTANDRFIWAAR LFSAAAAIGGTYWDLVYDWGLLQRGSKNRLLRDKLLVPHKSVYYIAMVSPEFIGCLDEVLNVLLRFAWVQTVVNFDLKFLHEKTIVAIIASLEIIRRGIW NFFRLENEHLHNVGKYRAFKSVPLPFNYDEDDDKDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	1.0	0.9012
					Lus10039764 [exp]	4.7	0.8168
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	6.0	0.8075
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	15.1	0.7417
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	16.0	0.7546
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	16.1	0.7216
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	18.1	0.7697
AT2G23140			RING/U-box superfamily protein...		Lus10019306 [exp]	19.9	0.6916
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	21.3	0.7237
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	21.5	0.7770

Compare expression of checked genes

Lus10000203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.