Plant FIBer expression Database

Lus10000204 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78590 153 / 2e-46 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035645
[exp]
240 / 8e-81 AT1G78590 384 / 1e-134 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Lus10010749
[exp]
231 / 1e-78 AT1G78590 211 / 7e-68 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G104400
[exp]
170 / 2e-53 AT1G78590 416 / 4e-147 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF01513 NAD_kinase ATP-NAD kinase
Representative CDS sequence
>Lus10000204 pacid=23155615 polypeptide=Lus10000204 locus=Lus10000204.g ID=Lus10000204.BGIv1.0 annot-version=v1.0
ATGGCGCGGAGGAGGGTGCTACTCTTGTTGAAGCCCTTTGATATGTACCCAATTGGCCAACTCTACTCCCAGTCTCGCGCTACCGATCCTAAGATTTTGC
AATTCCTAGATAATAGGCGGAAGGTCCATAGAGAAGCCGTTCACTTCTGTCAGAGCATTTTGCAGAAGAAGGCAGTTGATTGGGAACCGGTTGTACGAGC
TAATTTGTGTCGGCCGATTCAAAATGTTGATTTTGTAATCACTGTTGGTGGTGATGGCACACTTTTGCAAGCAAGTCATTTCATGGATGACTCAATTCCA
GTTCTTGGAGTGAACTCAGACCCCACTCAAGTTGAAGAGGTAGGGACAGCATTGGATCAAAGTCTATCGAGTAACAACTTGAACTTGCTGCGTTTTCTGC
AGTGTGATTGA
AA sequence
>Lus10000204 pacid=23155615 polypeptide=Lus10000204 locus=Lus10000204.g ID=Lus10000204.BGIv1.0 annot-version=v1.0
MARRRVLLLLKPFDMYPIGQLYSQSRATDPKILQFLDNRRKVHREAVHFCQSILQKKAVDWEPVVRANLCRPIQNVDFVITVGGDGTLLQASHFMDDSIP
VLGVNSDPTQVEEVGTALDQSLSSNNLNLLRFLQCD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78590 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINA... Lus10000204
[exp]
0 1
AT1G77270 unknown protein Lus10042760
[exp]
4.6 0.7936
AT4G21065 Tetratricopeptide repeat (TPR)... Lus10005207
[exp]
4.6 0.8057
AT1G74630 Tetratricopeptide repeat (TPR)... Lus10023592
[exp]
15.7 0.8005
AT2G37560 ATORC2 origin recognition complex sec... Lus10024412
[exp]
16.1 0.7857
AT5G04780 Pentatricopeptide repeat (PPR)... Lus10034715
[exp]
18.0 0.7702
AT2G40720 Tetratricopeptide repeat (TPR)... Lus10027366
[exp]
24.1 0.7891
AT3G49170 EMB2261 embryo defective 2261, Tetratr... Lus10004253
[exp]
26.5 0.7850
AT1G31650 ATROPGEF14, ROP... RHO guanyl-nucleotide exchange... Lus10037260
[exp]
26.7 0.7853
AT3G15130 Tetratricopeptide repeat (TPR)... Lus10030124
[exp]
28.0 0.7426
AT5G55220 trigger factor type chaperone ... Lus10000783
[exp]
31.7 0.7687

Lus10000204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.