Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 51 / 1e-07 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 47 / 2e-06 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36930 47 / 3e-06 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 45 / 9e-06 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 44 / 2e-05 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G20180 44 / 3e-05 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT1G09530 44 / 4e-05 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT5G58010 43 / 6e-05 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G02590 40 / 0.0005 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 40 / 0.0007 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015734 [exp] 275 / 2e-92 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 234 / 9e-77 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 53 / 3e-08 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 47 / 2e-06 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 47 / 4e-06 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036286 [exp] 45 / 1e-05 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10021846 [exp] 45 / 1e-05 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10014726 [exp] 43 / 5e-05 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10022833 [exp] 43 / 8e-05 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066500 [exp] 50 / 3e-07 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 50 / 3e-07 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 47 / 2e-06 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 47 / 2e-06 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G109500 [exp] 46 / 7e-06 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 46 / 7e-06 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.014G111400 [exp] 44 / 3e-05 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.005G001800 [exp] 44 / 5e-05 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 44 / 5e-05 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G045400 [exp] 42 / 0.0001 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000208 pacid=23158593 polypeptide=Lus10000208 locus=Lus10000208.g ID=Lus10000208.BGIv1.0 annot-version=v1.0 ATGAAAGCACTCCAGAAGTTAGTCCCTAATGCAAACAAGGTATTGGGCATCACATACAAAGTTGTCTTCTTTCTGAAACAACCTTTTCAAGGGTTAACTC AATGTTTCACCTCTGTTGATCAGACGGATAAAGCTTCGATGTTGGACGAGGTGATCGATTACTTGAGGCAACTACGAGCACAAGTTGAAATGATGAACAA TATTAGAAGCATGAAACCCCCACAACCATCACAAATGATGATGATGGTCCCCAACATTGATCAAATGCCTCTCTTTGGTTTAGGAATGGGAATGAATCCA TTAGCATCATCATCATCGTCGATTCACATGCGTCATCTTCTACCTCCATCAGCATTCATGACTAATACCACTCCTCCATTTCTTCTTCATCACTCTACTG CAAATATGAACTACAACAATACTTGTAAGAGCAGTGGAGAAGCTAATTTGTCATCGTTGAATGCAGCACAGTCTTCCATGGATGTAGAGCTTTACTTGAA GAACATGGCTGCAATGGATCAACAGCAGCAACAAGAAGTCCATAATCGTAGCACAAATGCGATCGGTGCTGCATCTCACCATTCCAGCCATACTATTCAA AGGGACAAGTAA
AA sequence Show only first row Show all	>Lus10000208 pacid=23158593 polypeptide=Lus10000208 locus=Lus10000208.g ID=Lus10000208.BGIv1.0 annot-version=v1.0 MKALQKLVPNANKVLGITYKVVFFLKQPFQGLTQCFTSVDQTDKASMLDEVIDYLRQLRAQVEMMNNIRSMKPPQPSQMMMMVPNIDQMPLFGLGMGMNP LASSSSSIHMRHLLPPSAFMTNTTPPFLLHHSTANMNYNNTCKSSGEANLSSLNAAQSSMDVELYLKNMAAMDQQQQQEVHNRSTNAIGAASHHSSHTIQ RDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	1.4	0.9898
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	2.4	0.9863
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	2.8	0.9798
					Lus10002317 [exp]	3.9	0.9846
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	6.3	0.9581
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	7.2	0.9472
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	7.4	0.9729
					Lus10002764 [exp]	7.5	0.9456
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	8.8	0.9670
					Lus10038295 [exp]	9.2	0.9665

Compare expression of checked genes

Lus10000208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.