Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) AT5G39380 46 / 7e-05 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015733 [exp] 957 / 0 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 791 / 0 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 790 / 0 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 162 / 7e-42 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10034717 [exp] 110 / 9e-28 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 62 / 1e-09 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10034718 [exp] 45 / 0.0002 ND 47 / 4e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090200 [exp] 63 / 3e-10 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 62 / 8e-10 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 57 / 2e-08 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000209 pacid=23158594 polypeptide=Lus10000209 locus=Lus10000209.g ID=Lus10000209.BGIv1.0 annot-version=v1.0 ATGAAGATGTTTAATGATACCTTCTTGGGTAAAGAGCACCATGATGTGCTTTGGAACACGGCTGCAACTTTGATGGAGAGGAGGAAGAAGAAGATGTCGT CTTCGAGTACTGTTGGAAGTTCCATAATTGATTCTCCTAAGTTTCCTGCATCCAATGGAGAAGAGTTTGTTTCAGCATCATTAGCAAAGAAAGGAGGAGG CACCCTTCGAAAGGATAATGGTCACTCGCCTTCTCGTTCCGAGATTGGCATTGCGACAAGTCCAAAGCATTACAAACATGTTTCATCCTCTGGTTTGATC AGAAGGGACAATGTATCGCCTTTTACCAGGAGCACGAATCCAAGTTTGTTAAAAACTGGAACACCATCATCCTCATCTACTTCACAACTTGGTGTTGATA GTCACAAATCATCTCAAAATTCTAGAAGAAGATCTGTCTCAGTCTCAAAAGCAAGAATTTCATCTTCAGTTTCAAAACTTGACATTTCATCAACTTCAAA TAGTCTGAAGCCTAAAAAGTCTGAGACTTTAGTTTCTCCAGTACAAAGGAGATCAGGAATTAGCATGTCAAAGTTGGCACCTTCTTCTGCTTCTGTCAAA GACCTTGAAAGATCACCAACACATCATCTATTGCAAAGAAGGTCCATGTTGCCAAAAGAAGATAGAAAGGTACGATCTTTATCGGTTGGGAGATCCATTG CACAAAACAGAACAGAACAGAAAAGTTTGGGGGCAGGTAAGCTTGTTGAACATAATAAGAGTACTGTGTCTTCTTCTCCTGCAAAGCACAAGTTTTTGAG GAGGCAGACTATATCAGAGCATGTAGGCAGTTCAACAAAGAGGCCTACTACAAGATTATCCAATGGAGGAAAAGGCGTGGATACGAAATCATTATCGCGC CTTAAAGATATTGAACATAACAATCATGTAAAGCATAAGAATCATGTAAAGCAAGTTGAAGCTGATGATGAGAAGGAAGTAGTAAAACCGAAAATTACTG CAGAAAAATATTTACCATTGGTTTCTTCTTCATCCTCTAAGCATGAACCTCACAAAGTCACTCAATCAAGCTCACAAGCATCCACAATGAAGGTCCTGAA GCGTACAAAATACGTTCAAGGGTACGGGAATTTACGAAGAATTAGAGCAAGATCTGCGAAGTCTGAACCCATGGGAGTGCGATCCAATGATATGTATAGT GTGAACTCATCAACGGGGAGCTGCGAAACCGACCTTAATGTCCTCGAGCAAAACGTAATGGAAAGAATACTAGAGTCCAGGAGTAGTACTACTGCTATTA GCACGAGTAGGCGTACTAGTACAAGAAGTGGAGCATTAAGCAGTACTGGAGATCACAAGGAAAAGCAGCCACGGAAATTGAAAGTTAGGCCAGGAAGAGT GATTGAGTTCAAGTATGAAATTACCAGTCCCAGGAGACTCAAGTTCAAGAGGACATCACCACCAAAACGACATGATAACACATCATCACTTGCCAAAGTC GACATAAAGTTTGAAGTGCTAAGGAATGCTGAGAGAAGACAAGAAAGTGGGGGAATTGAGCTTCAAGAAGTTGATGCTAACGAGCAAGCGGGTCCGAGTC GACAAGACATAGATGAACAAAACATATCAAAAGAAACAACAAGTGAGATGATTATTGAGGATAGGAAGATTAAAGTGAAGGCTCTGGTTGGTGCTTTTGA GTCGTTGATCTGTGTTCAAGATTCTAACACAGTTCCAACAGTATCCGAGTGA
AA sequence Show only first row Show all	>Lus10000209 pacid=23158594 polypeptide=Lus10000209 locus=Lus10000209.g ID=Lus10000209.BGIv1.0 annot-version=v1.0 MKMFNDTFLGKEHHDVLWNTAATLMERRKKKMSSSSTVGSSIIDSPKFPASNGEEFVSASLAKKGGGTLRKDNGHSPSRSEIGIATSPKHYKHVSSSGLI RRDNVSPFTRSTNPSLLKTGTPSSSSTSQLGVDSHKSSQNSRRRSVSVSKARISSSVSKLDISSTSNSLKPKKSETLVSPVQRRSGISMSKLAPSSASVK DLERSPTHHLLQRRSMLPKEDRKVRSLSVGRSIAQNRTEQKSLGAGKLVEHNKSTVSSSPAKHKFLRRQTISEHVGSSTKRPTTRLSNGGKGVDTKSLSR LKDIEHNNHVKHKNHVKQVEADDEKEVVKPKITAEKYLPLVSSSSSKHEPHKVTQSSSQASTMKVLKRTKYVQGYGNLRRIRARSAKSEPMGVRSNDMYS VNSSTGSCETDLNVLEQNVMERILESRSSTTAISTSRRTSTRSGALSSTGDHKEKQPRKLKVRPGRVIEFKYEITSPRRLKFKRTSPPKRHDNTSSLAKV DIKFEVLRNAERRQESGGIELQEVDANEQAGPSRQDIDEQNISKETTSEMIIEDRKIKVKALVGAFESLICVQDSNTVPTVSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	0	1
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	1.7	0.9807
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	2.0	0.9720
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	2.2	0.9664
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	2.6	0.9613
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	2.8	0.9786
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	3.9	0.9728
					Lus10018443 [exp]	4.6	0.9410
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	4.7	0.9392
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	6.0	0.9619
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	7.3	0.9580

Compare expression of checked genes

Lus10000209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.