Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28706 269 / 4e-89 pfkB-like carbohydrate kinase family protein (.1.2.3.4) AT5G43910 215 / 3e-69 pfkB-like carbohydrate kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011270 [exp] 329 / 6e-113 AT4G28706 541 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254500 [exp] 278 / 3e-92 AT4G28706 537 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10000210 pacid=23149217 polypeptide=Lus10000210 locus=Lus10000210.g ID=Lus10000210.BGIv1.0 annot-version=v1.0 ATGCTGCTCTCACTCGCCTCCACCACCGCCACCTCCGTCACTGCCAATGCCGTCGTTTCTCTCTACCGCTCCTCGTTTCCATCTTCTTCTTCTTCTTCTT GTTTCATTGTCTCGCATAACTCCAACGCCACCAGGTCACTTCCTCTTTCCCTCCCTCGTTTAGGGTGCGGAGCTGCGTCCGTTGACTTCTTGGCCGCAGT GGCTGCTTATCCTAATCCCGATGACAAAATCAGAACCACTAGTCTCAAGGTTCAGGGCGGCGGGAATGCTGGGAATGCTCTGACCTGTGCCGCTCGCTTG GGATTAAATCCCAGAATCATCTCTAAGGTTTCCGATGACAGTCAAGGGAGGGGGGTTTTGGCTGAACTGGAGGCCGATGGTGTTGACACTTCTTTCTTCG TGGTCGCCAAGGAAGGCAATTCGCCATTCACCTATGTCATCGTTGACAACCAAACGAAAACTCGAACATGTATTCACACTCCTGGAGACCCACCCATGAT TCCTGAAGATCTTTCTGAATCCAGTCTTGCTTCAGCATTAGATGGAGCTACACTGGTCTATTTTGATGGAAGGTTGCATGAGACTGCTTTAGTTATTGCG CAGGAGGCTACTCGCAAGAACATACCTATTCTGATTGATGCAGAAAGGAAGAGGGAAGGGTTGGATGAGCTGCTTAACCTGGCTACTTATGTTGTATGCT CAGCAAAGTTCCCACAGAAGGGCAGAGAGATGTGGGTAAGTTTGTTGATCAAATGGGAATCCTTATGA
AA sequence Show only first row Show all	>Lus10000210 pacid=23149217 polypeptide=Lus10000210 locus=Lus10000210.g ID=Lus10000210.BGIv1.0 annot-version=v1.0 MLLSLASTTATSVTANAVVSLYRSSFPSSSSSSCFIVSHNSNATRSLPLSLPRLGCGAASVDFLAAVAAYPNPDDKIRTTSLKVQGGGNAGNALTCAARL GLNPRIISKVSDDSQGRGVLAELEADGVDTSFFVVAKEGNSPFTYVIVDNQTKTRTCIHTPGDPPMIPEDLSESSLASALDGATLVYFDGRLHETALVIA QEATRKNIPILIDAERKREGLDELLNLATYVVCSAKFPQKGREMWVSLLIKWESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10000210 [exp]	0	1
AT3G52230			unknown protein		Lus10037916 [exp]	5.1	0.8191
					Lus10031873 [exp]	11.4	0.8231
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	15.0	0.8045
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	16.2	0.8092
AT3G62450			unknown protein		Lus10021958 [exp]	19.9	0.8059
AT1G73090			unknown protein		Lus10035752 [exp]	24.1	0.7862
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	24.9	0.8159
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	25.7	0.7454
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	28.1	0.7897
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	29.5	0.8050

Compare expression of checked genes

Lus10000210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.