Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 1081 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008175 [exp] 1019 / 0 AT2G48060 1855 / 0.0 unknown protein Lus10027982 [exp] 578 / 2e-180 AT2G48060 1580 / 0.0 unknown protein Lus10029972 [exp] 454 / 8e-149 AT2G48060 422 / 1e-130 unknown protein Lus10035352 [exp] 456 / 6e-144 AT2G48060 720 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037700 [exp] 1296 / 0 AT2G48060 2623 / 0.0 unknown protein Potri.014G137200 [exp] 1115 / 0 AT2G48060 3339 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12166 [flax] [poplar] Piezo_RRas_bdg Piezo non-specific cation channel, R-Ras-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000212 pacid=23173315 polypeptide=Lus10000212 locus=Lus10000212.g ID=Lus10000212.BGIv1.0 annot-version=v1.0 ATGTTCGTATTCCTATTTGGCTCAGTCATCACCCTCGAGTACCTCGCCATTTGGCTGTACCGATTCGGGCAGCAGCATAACCCCAGTGGTAGTAGTACAC AAGTTCCTTGCAATAACTGTTGGGAGAGCTCTGATATCTTCTTTTATCACTGCCAAAAGTGCTGGCTAGGAGTCATAGTTGATGATCCAAGCATTCTTGT AAGCTATTATGTAGTCTTCTTGCTTGCGTGTTTCAAGTTCCGTGCTGATCGTTTGTCAAGCCAGACAGTATCAGATACCTACCAGCAAATGATATGCCAG TACAAGAGTTCCTCACTTAACGATCTCTCGTTCAAAACGAGATACAAGTGGACGGTATTCGATTACCTTCGGCTTTATAGCTATTGTCACTTGCTAGATC TCGTCCTTGCTTTAATCCTGATCACCGGTACACTCGAATTCGACGTTCTTCACCTAGGTTATCTTGGTTTCGCCCTGGTATTCTTCAGGATGAGATTAGA AATGCTGAAAAAGAAGAACCAGATATTCAAGTTCTTGAGGATGTACAATTTCGCCATAATCGTTCTTTCCTTGGCTTATCAATCACCTTATGTGGGAACT TTCTGCGATGGAAAATGCGGGTTGATAGCCTACATCAGCAATGTCGTTGGCTTCTATAAGTATGATTATGGATTTCGGATCACTTCAAGATCAGCACTTG TGGAGATCATCATATACATGCTGGTATCGCTGCAATCGTACATGTTCTCAGCCCCGGAGTTTGATTACGTAGCGACATACATTGAGGCCGAACAGATTGG AGCAAGGTTGCAGGAGCAGGAGAAACGGGCTGCATGGAAAACTGAACAGTTGCAACAGATACGTAAGGCAGAAGAGCAGAAGCGTCTACGTAATCTACAA GTTGAGAAAATGAAATCCGAGATGCTTAACCTTCAAATTGAACTTCAAAGAGGGAGAACTACGGGGAACTGTGGTAATTCTTCTCAAGGTGATGCGTTCA TGAAGACCAGAAACTGTTCCCTAAATACCGAAACTTTAAACAGCATCTTGGATGATAGTGACGTTGATGGAAGCCCTTCGACAAAACAGTTCGAAGACGT AGTATGCGAGATCACTGAGCTAAAGGATACGGGTTTTACTTACGAGTTTGTGAGTGGAACGCATGAAAGGGATAGATTCAATGCGAATACAAACACATTA ATACATCTCTTTAACGATGGAGTTTCTCAGGTTCAGTCATTAGGGAACATGGCAGTCAACAATTTGGTGCATTTACTGAACATTAAAGAGGAAGATTATG CTTCAGACGATGATTCCTCCCAGGAGGAGATGGCCTGTGGGATAGCAAACCCAAACATAGGTTCAGAACACTTGCCATGGACCTTTTCAATGCAGTCTGA AGGTGATCAGACTGCATTTCAACAAATCGGGATGATCCTACGTTACATTTGGGCACAAATGCGTTCAAACAACGACATTGTATGCTACTGCTGCTTTGTT CTGGTATTCCTCTGGAACTTCAGTTTGTTCTCAATGGCTTATCCTGCAGTTCTGTTTCTATATGCTCTATTTGTCAACACCGGTCCAAGCAACATTTTCT GGGTTATTATACTGATCTACACCGAGATGTGTATACTGGCACAGTACATATATCAGATTACGATCCAGCGGTGTGGGATGACGTTCAAGATGAGCTTACT TCAGGAACTCGGATTCCCTCCACATAAGATCCTCTCATCTTTCGTGCTCAGCAACTGGCCGCTTTTTCTCGTGTACTTATTCACACTCCTACAAACATCT ATAACAGCTAGAGATGGCGAATGTATGACTACTATTGCTGAACTCAGCTCCCAAAGGAGGAAAAGTAAAAGCCACCTTGGAGGAGTTGTTAATAATGACA GCATGATAAGTCCAGCAATCTCGGCTAAAAACTCAGTCCGGTTCTTGTTCAGGAACCTCTACTGGTTTTGGCAGTCTCTAACCCAGGGTGCCGAAACTCC ACCTTACTTTGTCCAGCTGTCTATGAAAGTCGATCTATGGCCGGAGGATGGACTAGTCGGTCAGCTTGACAAAATGAAATCAGCAATCAACAAACTGTTG AAGATCATCCATGACCAAAGATGCCAGGATAGAAGCCAGAATCATTTCCACCTCGCTAGTAAAGTTCGCGGACAGAGCATCGATAGAAGTCCTGAGGATG ATAGTGTTGCTCTCGCGGTTTTTGAGGTGATGTATGCTTCGCCATTGAAAGCATGCGTACGGCCAGAGTTTCACACTTCACTCACTCCTGCAGCAGATGT GGCTTCAGAAATATTGGAAGCTCAACTTGCTGGTGCTTTTAAGATTATAGAGTTCCCATACCCGGTCATCTCGGTGATTGGTGGAGCTAAAAAGCACATT GATCTTTACGCCTACATATTCTGTGCAGATTTGGCTGTGTTCTTTCTGGTGGCTATCTTTTATCAATCGGTCATGAAGAACAATAGCGAGTTCCTCGAAG TTTATCAGCTTGAAGATCAGTTTCCTGAAGATTTCGTCTGCGTATTAATGGTGATTTTTTTCCTTATAGTGCTGGATCGAGTCATATACCTTTGTTCATT CGCCACGGGAAAGCTGTTCTTTTATCTATTCAACATCGTCCTCTTCACATATGCTGCCACTAAGTACGCTTGGAATATGGAACCGCAACACAGTAATGCA GGAAGGTTAGCACTCCGAGCTATTTATCTCGCGAAGGCGGCCTCTCTAACACTCCAAGCAATACAAATACACCATGGCATTCCACATGAAAGCACTTTGT ACAGACAGTTCTTGACGAGCAACATATCCAGGATTAATTACTTGGGATTCAGGCTCTATCGTGCTCTCCCTTTCCTTTACGAATTGCGATGTGTGCTTGA TTGGTCTTGCACAACTACTTCGTTGACCATGTACGACTGGTTGAAGGTACGTACGTACACTGAAAATTATTTATACAAACCACAATTGTTTTGTTCTGGT AACTGA
AA sequence Show only first row Show all	>Lus10000212 pacid=23173315 polypeptide=Lus10000212 locus=Lus10000212.g ID=Lus10000212.BGIv1.0 annot-version=v1.0 MFVFLFGSVITLEYLAIWLYRFGQQHNPSGSSTQVPCNNCWESSDIFFYHCQKCWLGVIVDDPSILVSYYVVFLLACFKFRADRLSSQTVSDTYQQMICQ YKSSSLNDLSFKTRYKWTVFDYLRLYSYCHLLDLVLALILITGTLEFDVLHLGYLGFALVFFRMRLEMLKKKNQIFKFLRMYNFAIIVLSLAYQSPYVGT FCDGKCGLIAYISNVVGFYKYDYGFRITSRSALVEIIIYMLVSLQSYMFSAPEFDYVATYIEAEQIGARLQEQEKRAAWKTEQLQQIRKAEEQKRLRNLQ VEKMKSEMLNLQIELQRGRTTGNCGNSSQGDAFMKTRNCSLNTETLNSILDDSDVDGSPSTKQFEDVVCEITELKDTGFTYEFVSGTHERDRFNANTNTL IHLFNDGVSQVQSLGNMAVNNLVHLLNIKEEDYASDDDSSQEEMACGIANPNIGSEHLPWTFSMQSEGDQTAFQQIGMILRYIWAQMRSNNDIVCYCCFV LVFLWNFSLFSMAYPAVLFLYALFVNTGPSNIFWVIILIYTEMCILAQYIYQITIQRCGMTFKMSLLQELGFPPHKILSSFVLSNWPLFLVYLFTLLQTS ITARDGECMTTIAELSSQRRKSKSHLGGVVNNDSMISPAISAKNSVRFLFRNLYWFWQSLTQGAETPPYFVQLSMKVDLWPEDGLVGQLDKMKSAINKLL KIIHDQRCQDRSQNHFHLASKVRGQSIDRSPEDDSVALAVFEVMYASPLKACVRPEFHTSLTPAADVASEILEAQLAGAFKIIEFPYPVISVIGGAKKHI DLYAYIFCADLAVFFLVAIFYQSVMKNNSEFLEVYQLEDQFPEDFVCVLMVIFFLIVLDRVIYLCSFATGKLFFYLFNIVLFTYAATKYAWNMEPQHSNA GRLALRAIYLAKAASLTLQAIQIHHGIPHESTLYRQFLTSNISRINYLGFRLYRALPFLYELRCVLDWSCTTTSLTMYDWLKVRTYTENYLYKPQLFCSG N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10000212 [exp]	0	1
					Lus10012088 [exp]	6.3	0.7266
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	16.5	0.7554
					Lus10004594 [exp]	29.6	0.6988
					Lus10037909 [exp]	61.0	0.6251
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015305 [exp]	64.7	0.6603
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	72.5	0.6296
					Lus10027385 [exp]	119.5	0.6552
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	162.7	0.6226
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	179.6	0.6347
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	187.9	0.6292

Compare expression of checked genes

Lus10000212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.