Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 402 / 2e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 394 / 7e-127 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 392 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 392 / 4e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 378 / 2e-120 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 374 / 2e-118 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01030 370 / 5e-118 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G55740 367 / 5e-116 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 358 / 2e-113 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022368 [exp] 943 / 0 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007772 [exp] 764 / 0 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 436 / 5e-143 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 410 / 9e-135 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 397 / 1e-128 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 387 / 1e-124 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 375 / 4e-120 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 388 / 1e-119 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040917 [exp] 382 / 1e-119 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018800 [exp] 984 / 0 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 424 / 1e-138 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 405 / 4e-131 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 398 / 5e-129 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 386 / 3e-123 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 383 / 6e-122 AT3G22690 570 / 0.0 unknown protein Potri.007G104700 [exp] 378 / 1e-121 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 382 / 2e-121 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 369 / 3e-118 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 372 / 5e-118 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000213 pacid=23170180 polypeptide=Lus10000213 locus=Lus10000213.g ID=Lus10000213.BGIv1.0 annot-version=v1.0 ATGGCGATTAAACTTGGTTTTATAGTGAGTATTTATGTGGGTAATGCTTTGATAGACATGTACGGTAAGTGTGGAAGCCTGGATGATGCTCTTAAAGTTC TGGAAATGATGCCTGAACGAGATAATGTGTCCTGGAATTCTCTTATTGCTGCTTGTTGTGCTAATGGAATGGTGGATAAAGCATTGCAATCTTTGGACAA GATGGTTGCTTTTGATAAATTGACGCCTAATCTTATTTCTTGGAGTGCGGTTATTGGTGGGTTTGCTCAGAATGGTTATGATGAGGAAGCTATAGAGTTG TTGTCTCGAATGCAAGCAGAGGGCCTTCGGCCAAATGCACGGACACTAGCTAGCATCCTTCCAGCTTGTGCTAGACTGGAAAGGATTGGACTTGGCAAAG AATTCCATAGCTATATACTGCGACACGGTTTTATGCCTAACCGATTTGTTGTCAATGGATTAGTTGATGTTTATAGGAGATGCAGTGATATGGCAAGTGC ATATAAAATTTTCATCAAGTATTCCGGAAGAAATTCCATCTCTTATAACACAATGATTGTTGGTTATTGTGAGAGTGGTGATGTTTCTAAGGCCAAGGAG CTCTTCGATCTGATGGAGCTTAGGGGCATTGAAAGAGATTTAATTTCTTGGAACTCCATGATTTCAGGATATGTTGATAACCTCCTGTATTCCGAGGCTC TGAGTATGTTTAGGGATTTGATGAGGTCAGGAAAAATAGAACCAGATTCTTTTACATTAGGAAGTGCTCTTGCTGCTTGTGCTGACATGGTTTCTCTAAG ACTGGGCAAGGAGATTCATCCCGTTGCAATTGCCAGAGGCTTGCAATGTAATACATTTGTTGGTGGAGCTCTGGTGGAAATGTACTGTAAATGTCAGGAC TTGGTGGCAGCCCAGTTGGCTTTTGATGAAGTCGTTGAGAAGGACATTCCTACATGGAACGCTTTGATATCTGGATACGCTAGATTAAACGCGACAGAAG AAGTCCGAATTTTGCTTCGAGAAATGAAAGACGATGGTTTTGAACCAAGTTCGTACACGTGGAATGGCATTCTTGCAGGTCATTTAGAGAATGGCCGCCT AGATCTAGTTATGCAGTCATTCTCTGAAATGCTAGCTTCAAACTTGTGGCCGGATATTTACACTCTTGGCAATGTTTTAGTTTGTTGTTCAAGGCTGGCT ACACTTGGGAAAGGGAAACAAATGCATGCTCACTTGATTAGAAGGAGATATGACTTTGATGTTCATATAGGAGCTGCTCTTGTAGATATGTATTCCAAAT GTGGGAACATCAAATATGCTGCGATAGCTTACAATCGGATATCCAAACCGAATTTGGTATGCCACAATGTGATGCTTACTGCTTACGCGATGCATGGATA CGGGGCAGAAGGAATAGCATTGTTTCAAAGAATTCTTGCTACTGGGTTCCAACCAGATGAGGTGACTTTCTTATCAGCACTTTCTTCATGCGTTCACGCT GGATCGATCGAGACAGGCTACGAATTCTTCAAGTTGATCGGGTTTTATAGCTTGAAGCCTACGCTAAAACACTTCACGGCTATGGTTGATCTGTTGAGTC GTTCAGGGAAGCTTACAGAAGCATATGAGCTCATCCGGACGATGCCAATGAAACCCGATTCAGTTCTATGGGGAGCTTTGCTTGGAGGGTGTGTGGTTCA TGGTAATGTTGAGTTGGGAGAAATTGCTGCAAACAAGCTAATCGAGTTAGAACCGGACCAAACTGGGAATTATGTGTTGCTTGCTAATTTGTATGCTTAT TCGGGAAGATGGTCGGATTTGGGTAGAACAAGGAATATGATGAAGGAGAGAGGGTTGCAGAAGAGCCCAGGATGTAGTTGGATTGAGGACAGAGATGAAA TCAATGCGTTCATTGCTTGCGATACGTCCCATAAGAGAACAACAGATATCTATGCTACTTTAGATCACTTGACTCTTCATATGACAACGGGGTTATTGGT AGCTTAG
AA sequence Show only first row Show all	>Lus10000213 pacid=23170180 polypeptide=Lus10000213 locus=Lus10000213.g ID=Lus10000213.BGIv1.0 annot-version=v1.0 MAIKLGFIVSIYVGNALIDMYGKCGSLDDALKVLEMMPERDNVSWNSLIAACCANGMVDKALQSLDKMVAFDKLTPNLISWSAVIGGFAQNGYDEEAIEL LSRMQAEGLRPNARTLASILPACARLERIGLGKEFHSYILRHGFMPNRFVVNGLVDVYRRCSDMASAYKIFIKYSGRNSISYNTMIVGYCESGDVSKAKE LFDLMELRGIERDLISWNSMISGYVDNLLYSEALSMFRDLMRSGKIEPDSFTLGSALAACADMVSLRLGKEIHPVAIARGLQCNTFVGGALVEMYCKCQD LVAAQLAFDEVVEKDIPTWNALISGYARLNATEEVRILLREMKDDGFEPSSYTWNGILAGHLENGRLDLVMQSFSEMLASNLWPDIYTLGNVLVCCSRLA TLGKGKQMHAHLIRRRYDFDVHIGAALVDMYSKCGNIKYAAIAYNRISKPNLVCHNVMLTAYAMHGYGAEGIALFQRILATGFQPDEVTFLSALSSCVHA GSIETGYEFFKLIGFYSLKPTLKHFTAMVDLLSRSGKLTEAYELIRTMPMKPDSVLWGALLGGCVVHGNVELGEIAANKLIELEPDQTGNYVLLANLYAY SGRWSDLGRTRNMMKERGLQKSPGCSWIEDRDEINAFIACDTSHKRTTDIYATLDHLTLHMTTGLLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	2.4	0.8797
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	2.8	0.8771
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	3.5	0.8563
AT5G08010			unknown protein		Lus10040520 [exp]	6.7	0.8567
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	8.0	0.8206
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	8.1	0.8422
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	9.5	0.8310
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	9.8	0.8348
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	10.6	0.8359
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	10.7	0.8502

Compare expression of checked genes

Lus10000213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.