Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03720 69 / 1e-13 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 67 / 6e-13 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 0 / 1 CAT3 cationic amino acid transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020305 [exp] 131 / 3e-35 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 114 / 2e-29 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10001334 [exp] 58 / 1e-09 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 57 / 6e-05 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 56 / 6e-05 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 56 / 6e-05 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 56 / 6e-05 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039700 [exp] 59 / 2e-06 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 67 / 5e-06 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.013G065000 [exp] 56 / 0.0003 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000215 pacid=23180208 polypeptide=Lus10000215 locus=Lus10000215.g ID=Lus10000215.BGIv1.0 annot-version=v1.0 ATGATTGATACGATTTCTTGCAACAGAAGTTATCGTAAGGGCTTTTTTGTAATTTTCTTCCTTGAACAGGTTAGTGTGGGGACACTACTTGCATTCACTG CTGTTGCAGTATCCGTCCTGATACTAAGATACGTTCCTCCGGATGTGGTGCCAGTTCCCTCGTCCCTTCACGGCACGATTGATGTTTCGCCTTTGCTGCT TGGTGATGATGATGTTGAGGAAGTCAAGTTCTTCGATCATGGTAAAGCCTTGCATCACAGTGAAGGGACATCGGTTAGCAAATCTCTCGGTCACAAACCG ATCGTTCAAGTGGGCGGAGGTCTTCTCTTGTGTGGCTCGGTCGTCCTAGCTTGTATAGCTCAAGATAACGGGAGGCACAGCTTTGGACACACAGGAGGTT TCACTTGCCCTTTGGTCCCGTATCTACCGGTCGCTTGCATCCTGGGGCGAGACATGGCTCCGCGTGTCGCTATGGCTACTGATCGGGGCGCTTATCTACG TGTTCTATGGTCGGAATCACAGCTCTCTGATAGATGCCGTCTATGTTCCTACTGCTCATGCAAAGAAGGCACATTACGCTTCGTCGTCGCGATCATGAAG ACAAATCCGAGCTCTGGCCCGAGACTTGAGCTTTAA
AA sequence Show only first row Show all	>Lus10000215 pacid=23180208 polypeptide=Lus10000215 locus=Lus10000215.g ID=Lus10000215.BGIv1.0 annot-version=v1.0 MIDTISCNRSYRKGFFVIFFLEQVSVGTLLAFTAVAVSVLILRYVPPDVVPVPSSLHGTIDVSPLLLGDDDVEEVKFFDHGKALHHSEGTSVSKSLGHKP IVQVGGGLLLCGSVVLACIAQDNGRHSFGHTGGFTCPLVPYLPVACILGRDMAPRVAMATDRGAYLRVLWSESQLSDRCRLCSYCSCKEGTLRFVVAIMK TNPSSGPRLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58030		CAT2	cationic amino acid transporte...		Lus10000215 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011985 [exp]	5.1	0.9050
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	11.5	0.8981
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	19.6	0.8829
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	20.8	0.8980
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	32.9	0.8945
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	33.6	0.8935
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	33.8	0.8920
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	37.5	0.8774
AT4G38980			unknown protein		Lus10035474 [exp]	38.5	0.8677
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	41.4	0.8926

Compare expression of checked genes

Lus10000215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.