Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27530 392 / 6e-129 MAG4, GC6 MAIGO 4, golgin candidate 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035230 [exp] 650 / 0 AT3G27530 1204 / 0.0 MAIGO 4, golgin candidate 6 (.1) Lus10032089 [exp] 596 / 0 AT3G27530 1143 / 0.0 MAIGO 4, golgin candidate 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343500 [exp] 511 / 3e-175 AT3G27530 1249 / 0.0 MAIGO 4, golgin candidate 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04869 [flax] [poplar] Uso1_p115_head Uso1 / p115 like vesicle tethering protein, head region PF04871 [flax] [poplar] Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region
Representative CDS sequence Show only first row Show all	>Lus10000216 pacid=23164647 polypeptide=Lus10000216 locus=Lus10000216.g ID=Lus10000216.BGIv1.0 annot-version=v1.0 ATGCACGTTATGGTAAAGTATTTAGCTCTTGCCTCTGGTGCGAAACACAAAGAAGGAAAACCAAGTAAATCAGACAACTTATATATCCAAGCAATTATCC TGAAGTTGTTGGTCACTTGGATGGCCGACTGTCCCGCTGCTGTTGACTGCTTCCTAGATCTACGTCCCCATTTGTCATATCTGCTTGAGCTTGTCTCAGA TCAGTCTGCCACTGTAACTGTGAGAGGCTTAGCGGCGATTCTCTTGGGAGAGTGTGTTATTTACAACAAGTCTACTGAGGCCAGAAAAGATTTTCACGCA GTAGTTGATGGCATAAGTCAGAAGGTGGGGCTGACATCATATTTCCTTAAATTTGATGAAATGAAGAAAAGCTTCCTTTTCTCGTCTGAGAAATCCACAA CGTCTCATAAACCATTAAGAAGATCACCTGCTGCTAGTATGGCGGAGATTGAAGATGTTGATGAGCAGCATTCCTCCGATCAAAAGAGTGACGACCATCC CATTCTCTCATCGATGTTCGATGCAGATTTTGTTAACTTCATTAAGAGACTGGAATCAGAAATCCGAGAAAGCATTGTTGATGTCTATAGTCGCCCGAAA AACCAGGTGGCAGTTGTGCCAGTAGAGATGGAACAGAAGAGTGGCGAAACTGACAAGGACTATGTTAAGAGACTCAAGTCATTTGTTGAGAAACAATGCT CCGAGATACAGAATCATCTCGGACGGAATGCAACATTGGCAGAGGATCTGGTGAAAATAGGAGGAAGCGAGTCTTCCTACTCCGAGCAAAGAGTTAGGTC GGGATCTGAAAGGGTGCAGACAGAGACACTTCGCCGAGATCTCAAGGAAGCAAACCAAAGGATAGAGATGCTGAAGGCTGACAACACCAAACTCGAATCG GAAGCATCAATGTACCAGAATTTAGCTGGGAAGGTGGAGTCAGACCTGAAGAGTCTATCAAACACTTATAACAGCCTTGAACAGGCGAATTACCAGTTGG AGAAGGAGGAGCAGAGCAAGGTGGAGAAGCTGAGCTTAAAGTTAGCAGAACTGGGAGAGGCAAAGTTAGCAGTACTGGGAGAGGATGTTGATGAACTGCT GGATGGCATTGGTGATGATTTGGGACTTCCGGTGGATGGCGACGAAGATGCCGACTAA
AA sequence Show only first row Show all	>Lus10000216 pacid=23164647 polypeptide=Lus10000216 locus=Lus10000216.g ID=Lus10000216.BGIv1.0 annot-version=v1.0 MHVMVKYLALASGAKHKEGKPSKSDNLYIQAIILKLLVTWMADCPAAVDCFLDLRPHLSYLLELVSDQSATVTVRGLAAILLGECVIYNKSTEARKDFHA VVDGISQKVGLTSYFLKFDEMKKSFLFSSEKSTTSHKPLRRSPAASMAEIEDVDEQHSSDQKSDDHPILSSMFDADFVNFIKRLESEIRESIVDVYSRPK NQVAVVPVEMEQKSGETDKDYVKRLKSFVEKQCSEIQNHLGRNATLAEDLVKIGGSESSYSEQRVRSGSERVQTETLRRDLKEANQRIEMLKADNTKLES EASMYQNLAGKVESDLKSLSNTYNSLEQANYQLEKEEQSKVEKLSLKLAELGEAKLAVLGEDVDELLDGIGDDLGLPVDGDEDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	5.3	0.7312
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	8.7	0.6983
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	11.3	0.6348
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	11.7	0.5695
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	12.4	0.6852
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	19.1	0.6609
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	20.3	0.6691
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	22.1	0.6073
					Lus10001343 [exp]	22.4	0.6582
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	27.5	0.6179

Compare expression of checked genes

Lus10000216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.