Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 89 / 1e-21 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 77 / 5e-17 Chitinase family protein (.1) AT2G43580 75 / 3e-16 Chitinase family protein (.1) AT3G47540 66 / 3e-13 Chitinase family protein (.1.2) AT2G43610 62 / 9e-12 Chitinase family protein (.1) AT2G43570 62 / 2e-11 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 60 / 8e-11 Chitinase family protein (.1) AT2G43620 58 / 3e-10 Chitinase family protein (.1) AT2G43600 54 / 1e-08 Chitinase family protein (.1) AT3G12500 54 / 2e-08 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003227 [exp] 269 / 5e-91 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10035624 [exp] 219 / 3e-71 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10003226 [exp] 136 / 4e-39 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 124 / 2e-34 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 104 / 3e-26 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 89 / 7e-22 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 89 / 2e-21 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 88 / 2e-21 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10003231 [exp] 84 / 5e-20 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 91 / 4e-22 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 88 / 4e-21 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 88 / 5e-21 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 84 / 1e-19 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 82 / 5e-19 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 81 / 2e-18 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 74 / 4e-16 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G142000 [exp] 52 / 4e-08 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 52 / 5e-08 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 51 / 9e-08 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10000217 pacid=23140360 polypeptide=Lus10000217 locus=Lus10000217.g ID=Lus10000217.BGIv1.0 annot-version=v1.0 ATGCCCAAGTTTCCACACGTAGCCTTCTTCCTTCTCCTCCTAGCCGTTCCTTTCGGACTAGCCACGGCTAGAGACGTAACCACCATCGAGGTCGTCGACT CATCTCCTTGCCCTGACCAACTCAATCAGCAGATTACAGATCTCGATCAATTTGATGCGGATTTTGATCAGGACTCCCTCGAAGAAATCGATTCGGAGGA ACAACAGTACTTTGATGATGATGAAGCCTTGGACGACGGTGGGTACATAGTAATGCCAACTGACGACGAGGAGGGGACTGATTCGTCGTCGCTGGCAGAC GATGATGATGAAGATGATTCGGTGTCCGAAGAGGAGGGCAAATTGGGTATTCATGTTGGGAAAGTAGTGACATCGGCGTTCTTCAACAGCATTATTAGAC GGGCGGATCCAAGCTGTAAAGGGAAGCGATTCTACACCAGGGGTGCATTCCTCAATGCCACCAAATCATACCGCAAGTTTGGAAATCTCTCCAGAACTGC TGCTAAGCGTGAAATTGCTGCCTTTTTCGCCCACGTCACTCACGAAACTGGACGTAAGCTATATCGCATCTACCACTCTTGA
AA sequence Show only first row Show all	>Lus10000217 pacid=23140360 polypeptide=Lus10000217 locus=Lus10000217.g ID=Lus10000217.BGIv1.0 annot-version=v1.0 MPKFPHVAFFLLLLAVPFGLATARDVTTIEVVDSSPCPDQLNQQITDLDQFDADFDQDSLEEIDSEEQQYFDDDEALDDGGYIVMPTDDEEGTDSSSLAD DDDEDDSVSEEEGKLGIHVGKVVTSAFFNSIIRRADPSCKGKRFYTRGAFLNATKSYRKFGNLSRTAAKREIAAFFAHVTHETGRKLYRIYHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	1.0	0.9010
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	2.0	0.8434
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	13.2	0.7548
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	19.2	0.8028
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	26.3	0.7464
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	36.4	0.7642
					Lus10033046 [exp]	65.7	0.6422
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	75.1	0.6992
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	78.0	0.6771
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	97.6	0.6773

Compare expression of checked genes

Lus10000217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.