Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44446 813 / 0 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) AT2G24820 92 / 1e-19 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT3G44880 62 / 4e-10 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT4G25650 52 / 5e-07 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029678 [exp] 1004 / 0 AT1G44446 859 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000214 [exp] 996 / 0 AT1G44446 856 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042718 [exp] 956 / 0 AT1G44446 844 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042424 [exp] 91 / 3e-19 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10026246 [exp] 90 / 7e-19 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10025414 [exp] 75 / 6e-14 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10041348 [exp] 61 / 2e-09 AT3G44880 785 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10037370 [exp] 58 / 2e-08 AT3G44880 791 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10033784 [exp] 57 / 3e-08 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178300 [exp] 867 / 0 AT1G44446 843 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.002G083200 [exp] 858 / 0 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.018G015700 [exp] 93 / 8e-20 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.006G267300 [exp] 89 / 2e-18 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.004G217200 [exp] 56 / 4e-08 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 54 / 2e-07 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.003G219000 [exp] 54 / 2e-07 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 53 / 3e-07 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 52 / 8e-07 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 51 / 1e-06 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10000218 pacid=23180525 polypeptide=Lus10000218 locus=Lus10000218.g ID=Lus10000218.BGIv1.0 annot-version=v1.0 ATGACCGCTCTTGCAACCATCGCAGCTCTCTCCGTACCTATTTCTCTGTATAGATCATCCAAACTCGACGTCAGAAAGAGTTGCAAAGCAGGATTTAAGG TGTTTGCAGTGTTTGGAGAAGGAGGAGGGTTGGTGGAAAAGAAAAGTCAATGGGGGCCTCTATTCGAAGTGGAAGATCCTAGGTCAAAAATGCCACAATG TAAAGGCAAGTTCTTGGATGCCAACCAGGCTCTTGAAGTTGCTAGATTCGACATTCAATACTGCGACTGGCGTGCTCGTCAGGACCTGCTAACAATCATG CTTCTTCATGAGAAGGTTGTGGAAGTTTTGAATCCATTAGCACGCGAGTATAAATCAATCGGCACAATGAAGAAGGAGCTGGCTGAGTTACAAGAAGAAC TAACCCAAGCTCACACACAGGTTCATATATCTGAAGCAAGAGTGTCTACTGCATTAGATAAACTAGCTTACATGGAAGAGTTGGTTAACGATAAGCTGTT ACAAGATAGAAGCACAACAGAGATCGACCAAGCATCACCTTCTGGTCCTATTGCCACCGCTCCATCCGCCAAAATCGCCAGAGGAAAACCCCCCAGAAAA AGCTTGAATGTGTCGGGTCCCGTCCAGCCATACCCTCCTCATCTAAAGAATTTTTGGTACCCAGTTGCATTCTCGGCGGACTTGAAGGATGGCACCATGA TTCCATTTGATTGCTTCGAGAAACCTTGGGTAATCTTTCGCGGGAAAGATGGACAGCCAGGATGTGTCCAGAACACTTGTGCACATCGAGCATGCCCTCT TGATCTTGGTTCAGTGAACGAGGGACGAATTCAGTGTCCTTACCATGGATGGGAGTACTCAACAGACGGCAAGTGCGAGAAAATGCCATCTACAAGACTC CTTGATGTGAAATTAAAATCACTGCCGTGTTTCGAGCAAGAAGGAATGATCTGGGTTTGGCCTGGTAATGACCCACCTGCACCAAATCTCCCTTCGTTGA AACCTCCAGCAGGTTTTCAAATACATGCTGAGATCGTCATGGAACTTCCGGTCGAACATGGCTTACTTCTCGATAACCTCTTGGATCTTGCACATGCCCC TTTTACTCACACTTCTACTTTCGCCAAAGGCTGGAGTGTCCCCAACTTCGTCAAGTTTCTGACGCCTGCGTCTGGCCTTCAAGGATACTGGGACCCTTAT CCGATCGACATGGAATTTCGACCACCTTGCATGGTATTGTCAACCATTGGTATCTCAAAGCCTGGAAAGCTCGAAGGGCAAAGTACGAGAGAATGTGCAA CTCACCTTCATCAGCTTCACGTCTGCTTACCTTCAACAAGAAACAAGACCAGACTATTATACAGAATGTCCCTGGATTTCGCTCCTCTTCTAAAGCATGT CCCTTTCATGCAACATCTATGGAGACATTTCGCAGAGCAGGTTCTGAACGAGGATTTGCGGTTAGTGGTTGGGCAGCAGGAACGGATGAACAATGGGGAA AATGTTTGGAATGTGCCGGTATCATATGATAAGCTAGGAGTCAGATACAGGTTATGGAGAGATGCCGTGAACAGAGGAGAAAAGCAATTACCCTACAGCA CATAA
AA sequence Show only first row Show all	>Lus10000218 pacid=23180525 polypeptide=Lus10000218 locus=Lus10000218.g ID=Lus10000218.BGIv1.0 annot-version=v1.0 MTALATIAALSVPISLYRSSKLDVRKSCKAGFKVFAVFGEGGGLVEKKSQWGPLFEVEDPRSKMPQCKGKFLDANQALEVARFDIQYCDWRARQDLLTIM LLHEKVVEVLNPLAREYKSIGTMKKELAELQEELTQAHTQVHISEARVSTALDKLAYMEELVNDKLLQDRSTTEIDQASPSGPIATAPSAKIARGKPPRK SLNVSGPVQPYPPHLKNFWYPVAFSADLKDGTMIPFDCFEKPWVIFRGKDGQPGCVQNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRL LDVKLKSLPCFEQEGMIWVWPGNDPPAPNLPSLKPPAGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPNFVKFLTPASGLQGYWDPY PIDMEFRPPCMVLSTIGISKPGKLEGQSTRECATHLHQLHVCLPSTRNKTRLLYRMSLDFAPLLKHVPFMQHLWRHFAEQVLNEDLRLVVGQQERMNNGE NVWNVPVSYDKLGVRYRLWRDAVNRGEKQLPYST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	0	1
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000214 [exp]	1.7	0.9767
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10029678 [exp]	2.4	0.9757
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	3.0	0.9674
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	4.2	0.9044
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	7.0	0.8970
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	7.2	0.9266
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	10.4	0.8897
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	11.0	0.8858
AT5G08720			unknown protein		Lus10025701 [exp]	11.2	0.9047
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	12.0	0.8811

Compare expression of checked genes

Lus10000218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.