Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52160 149 / 4e-43 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT2G26250 145 / 5e-41 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT2G26640 112 / 4e-29 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G19440 111 / 1e-28 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 103 / 1e-25 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 102 / 2e-25 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 99 / 3e-24 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G04220 99 / 4e-24 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 97 / 2e-23 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G46720 92 / 8e-22 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028105 [exp] 300 / 7e-101 AT2G26250 607 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 146 / 2e-41 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10016528 [exp] 140 / 4e-39 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10040796 [exp] 138 / 3e-38 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10042318 [exp] 109 / 6e-28 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 109 / 6e-28 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10043300 [exp] 108 / 1e-27 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 108 / 2e-27 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10030209 [exp] 107 / 3e-27 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080400 [exp] 214 / 3e-67 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G218000 [exp] 132 / 3e-36 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.004G155600 [exp] 113 / 2e-29 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 112 / 7e-29 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 108 / 1e-27 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 106 / 6e-27 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 105 / 1e-26 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 104 / 4e-26 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 103 / 6e-26 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 102 / 1e-25 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10000219 pacid=23140017 polypeptide=Lus10000219 locus=Lus10000219.g ID=Lus10000219.BGIv1.0 annot-version=v1.0 ATGACAAGGGAGCAAGACCGTCCCGCCACCGAAATCCTCAACTGTGACATCGAGGATTCAGGTACCTATGCGGGTTCCCAGAGATTCTCTATCAAGTTGC TTCCCCCAATTCTACCACTTCCCATCTTCACTCCCCAACTTGGTTGGGAACATTTCATACCCAACTACCAACCTCTTGATGCTGTCTACATCTCTGGATT CTTTATTCTCATTGTTTACATCTACTTTGACTTGGCTCCTCGTTCTGTTTATCTCGTTAATTTTGCTTGTTACCATCCACCAAATCACTTAAAGATATCA AAAGAGGAGTTCATTAGCCTGGCAAAGGAATCTGGCCATTTCAACGATGCTTCGATCGCGTTCCATCACCACAGATTGAACAACTCTGGCATTAGAGACG AAACTTACATGCCAAGATCGGTTTTCCGCTCCAATGAGAAGATCACCCTCAAGTATGGAAGAGAAGAAGCTGCTATGGTGATATTTGGTGCAGTGGACGA CCTACTTGCTACTATGAAAATCCGGCCTAAAGACATCAAGATCCTTGTTGTCAACTGTGAGAAAAGATGTGATTGA
AA sequence Show only first row Show all	>Lus10000219 pacid=23140017 polypeptide=Lus10000219 locus=Lus10000219.g ID=Lus10000219.BGIv1.0 annot-version=v1.0 MTREQDRPATEILNCDIEDSGTYAGSQRFSIKLLPPILPLPIFTPQLGWEHFIPNYQPLDAVYISGFFILIVYIYFDLAPRSVYLVNFACYHPPNHLKIS KEEFISLAKESGHFNDASIAFHHHRLNNSGIRDETYMPRSVFRSNEKITLKYGREEAAMVIFGAVDDLLATMKIRPKDIKILVVNCEKRCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52160		KCS15	3-ketoacyl-CoA synthase 15 (.1...		Lus10000219 [exp]	0	1
					Lus10007009 [exp]	2.8	0.9060
					Lus10039737 [exp]	17.5	0.7828
					Lus10007012 [exp]	17.7	0.8443
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	18.4	0.8774
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	20.6	0.8617
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	21.0	0.8209
					Lus10026442 [exp]	25.4	0.8015
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	26.7	0.8275
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	28.3	0.8319
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	35.3	0.8302

Compare expression of checked genes

Lus10000219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.