Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 302 / 1e-91 disease resistance family protein / LRR family protein (.1) AT1G71400 232 / 2e-66 AtRLP12 receptor like protein 12 (.1) AT4G13810 223 / 9e-64 AtRLP47 receptor like protein 47 (.1.2) AT4G04220 216 / 1e-60 AtRLP46 receptor like protein 46 (.1) AT2G01950 210 / 8e-58 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G71390 204 / 1e-56 AtRLP11 receptor like protein 11 (.1) AT4G13880 203 / 2e-56 AtRLP48 receptor like protein 48 (.1) AT1G17230 203 / 2e-55 Leucine-rich receptor-like protein kinase family protein (.1) AT1G74190 202 / 2e-55 AtRLP15 receptor like protein 15 (.1) AT2G32660 197 / 3e-55 AtRLP22 receptor like protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000236 [exp] 1057 / 0 AT2G34930 328 / 2e-101 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1055 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 944 / 0 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 837 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 829 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 827 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 825 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 810 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 808 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 456 / 3e-155 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 384 / 2e-121 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 374 / 2e-118 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 374 / 3e-118 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 369 / 1e-116 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 365 / 4e-115 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 362 / 2e-112 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 355 / 8e-111 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 357 / 1e-110 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 349 / 1e-109 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000220 pacid=23163934 polypeptide=Lus10000220 locus=Lus10000220.g ID=Lus10000220.BGIv1.0 annot-version=v1.0 ATGGTAAACTGCCAACTATTCGGTCAGTTGACTGATAGAATCGGGAAGTTCAACAGGCTAAACCGTCTTTCGCTTGATACCAACTCTATATCTGGTCCCC TTCCGTCTTCATTTGGGGAACTGACATCCTTGAACTATGCAAACCTTGCAAACAACCGAATCAACGGGAATATTCCAGCAAGTTTCGGGAAACTTGCAGA GTTGGGCACCCTTGATATTTCTCAGAACTTAATGGACGGTGTTATTCTCCCTGAAATTCACTTTGCTAACCTCACAAAGTTGGGTATATTGAGCGCATCT GGAAACCACATGGTACTGGAAGTTGGACCAGATTCGGTTTTCCCTAAGCTCCTTGAGATAATAAACATGAATTCCTGGCACATTGGACCCGGGTTCCCCA AATGGCTCCAATCATTTCAGTATCTCAAATCTCTCGATCTCTCCAACTCCAGAATTTCAGAACCATTTCCAGATTGGTTCTGGGAATCACAATCAGAGTT CTATTATCTGAATTTCTCCCACAACCAAATCCCAGGAAGGCTTCCAACTTTCATGTCTGTTAAGTCTGCAGACTCAATGTATGACTTCAGCTTTAACAAC TTGGACGGTCCACTTCCAGTCATCTCATCTAATTTGACTGCATTGGATCTTTCCAACAATTTCCTCTCTGGAAACCTGCTCAAGTTCTTGTGCTTCAATC CAGCTCAGATGAGAGACACCGAGTTTCTCAATCTTCAAGGGAACCTTCTGTCCGGAGAGATGCCAGATTGTTGGAGGAGTTGGGAAAACTTGAAGGTTAT TAGACTGGGAAACAATCAATTGAGAGGGAACATTTCAAATTCCATTGGAACCTTAAGCAATCTCCTGTCTTTACGCATTCAGAACAATAGCCTGACCGGT GAAATCCCACTCTCCATAGGAAACTGCTCGAATCTAGTCTCGATTGACTTCGGCGACAATATATTCGAAGGGAGAATTCCAAGGTGGATTGGGGAAAAGC TTTCAAGGTTGGCCATCATCAATCTACGGGGGAATAGATTCCATGGGGATATTCCTGATGAGGTTTGCCATCTGCAGCTTTTACAAATATTGGACCTTTC TCACAACTTTCTATCTGGGAACTTGCCTGAATGTGTGGATAATATCAGTGCCATGGCCGATACAAGATACGTTGATGCAGGAGTAATTTACCTTTTCTTC GGCGGAGCAAAAACATTTGTGGAATACGAGGTTCTCGTAACGCAAGGTCAGGTTAAGACCTACAGCACCATTTTGAATTACGTCAGAAGTCTGGACCTCT CCTCGAATTTGCTGTCGGGGGACATTCCGAAGCAGATCACGAGCCTTGTAGCGTTGAAGTATCTGAACTTGTCGCGTAACTCATTCTCCGGTACAATCCC GGGGAACATAGCTGCCATGGAGTCATTGGAATCTTTGGACTTGTCTGAGAACAAACTATTTGGAGCAATCCCAGTTGGGATGGCAAGTATGACATTCTTG AATCATTTGAACTTGTCCTGCAACAACTTGAGGGGGAGAATTCCTTCAAGCACACAGCTGCAGAGCTTTGATCCATCTAGCTTTGTTGGAAACAAGGGAC TTTGTGGTTCTCCATTGATTGTGAACTGCAGCAGCGCTGACAACTTTGTGCCAGGTTCTGGCGAAGGAAACGAAGCCGATAATTCGAACTGGTTCCCGGT CAGTGCAATGTTTGGATATGTGGTAGGGTTTTGTGGCATTGTTGGTCCAGTAGCAGTCCACCAACAATGGATCACATGGACGAAGTGCTTACCTTGTTAA
AA sequence Show only first row Show all	>Lus10000220 pacid=23163934 polypeptide=Lus10000220 locus=Lus10000220.g ID=Lus10000220.BGIv1.0 annot-version=v1.0 MVNCQLFGQLTDRIGKFNRLNRLSLDTNSISGPLPSSFGELTSLNYANLANNRINGNIPASFGKLAELGTLDISQNLMDGVILPEIHFANLTKLGILSAS GNHMVLEVGPDSVFPKLLEIINMNSWHIGPGFPKWLQSFQYLKSLDLSNSRISEPFPDWFWESQSEFYYLNFSHNQIPGRLPTFMSVKSADSMYDFSFNN LDGPLPVISSNLTALDLSNNFLSGNLLKFLCFNPAQMRDTEFLNLQGNLLSGEMPDCWRSWENLKVIRLGNNQLRGNISNSIGTLSNLLSLRIQNNSLTG EIPLSIGNCSNLVSIDFGDNIFEGRIPRWIGEKLSRLAIINLRGNRFHGDIPDEVCHLQLLQILDLSHNFLSGNLPECVDNISAMADTRYVDAGVIYLFF GGAKTFVEYEVLVTQGQVKTYSTILNYVRSLDLSSNLLSGDIPKQITSLVALKYLNLSRNSFSGTIPGNIAAMESLESLDLSENKLFGAIPVGMASMTFL NHLNLSCNNLRGRIPSSTQLQSFDPSSFVGNKGLCGSPLIVNCSSADNFVPGSGEGNEADNSNWFPVSAMFGYVVGFCGIVGPVAVHQQWITWTKCLPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10000220 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	8.5	0.6177
					Lus10022865 [exp]	14.0	0.6150
					Lus10018591 [exp]	21.8	0.5636
AT2G27410	B3		Domain of unknown function (DU...		Lus10000815 [exp]	32.0	0.5211
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	43.8	0.5544
					Lus10035698 [exp]	54.3	0.5279
AT2G13980			Polynucleotidyl transferase, r...		Lus10011601 [exp]	58.7	0.5097
					Lus10021772 [exp]	69.5	0.4615
					Lus10028949 [exp]	86.3	0.5009
AT1G52190			Major facilitator superfamily ...		Lus10009505 [exp]	97.0	0.4738

Compare expression of checked genes

Lus10000220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.