Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57030 251 / 7e-82 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) AT3G10230 110 / 5e-29 AtLCY, LYC lycopene cyclase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021576 [exp] 286 / 2e-95 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 284 / 2e-89 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10038986 [exp] 110 / 1e-28 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10027278 [exp] 110 / 2e-28 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10013298 [exp] 100 / 6e-25 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10005189 [exp] 76 / 4e-18 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147300 [exp] 254 / 2e-82 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.016G040200 [exp] 114 / 4e-30 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.006G043092 [exp] 114 / 5e-30 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 106 / 5e-27 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.009G159800 [exp] 100 / 6e-25 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.001G229166 [exp] 74 / 3e-17 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10000221 pacid=23162268 polypeptide=Lus10000221 locus=Lus10000221.g ID=Lus10000221.BGIv1.0 annot-version=v1.0 ATGCAGTACGAGGTAGGAGGCCCGAGGGTCTCTGTTCAAACTGCTTATGGTGTGGAGGTTGAGGTGGAAAACAATCCATATGATCCCAGTCTGATGGTTT TCATGGATTACAGAAACTATACTAAACAAAACTCATCATCTTTGGAAGCTCAATACCCAACATTCCTTTACGCGATGCCCATGTCACCAACACGAGTCTT CTTTGAGGAAACATGTTTGGCATCAAAAGATGCCATGCCGTTTGACTTGCTGAAAAGAAAACTTATGTCAAGGCTAGAGACCATGGGAATCCGAATTTTG AGAACTTACGAAGAGGAGTGGTCATACATTCCGGTAGGTGGTTCCTTACCAAATACTGAGCAAAAGAATCTTGCATTTGGTGCCGCTGCTAGCATGGTAC ATCCAGCAACAGGAAATGCTTTGTCTAAAGGGAGCTGCCTCGGTTGGGGCATGGCGCTCCATGTCGTCCGCCCTAATGTTGACGACGAAGCATGTTTCGT TCTTTCTCTGGGCAATGCAGTCAAAGATGTGACTATTAATTAA
AA sequence Show only first row Show all	>Lus10000221 pacid=23162268 polypeptide=Lus10000221 locus=Lus10000221.g ID=Lus10000221.BGIv1.0 annot-version=v1.0 MQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRNYTKQNSSSLEAQYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKRKLMSRLETMGIRIL RTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGNALSKGSCLGWGMALHVVRPNVDDEACFVLSLGNAVKDVTIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	0	1
AT2G01755			unknown protein		Lus10005230 [exp]	1.0	0.9804
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	1.4	0.9630
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	1.7	0.9625
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	2.4	0.9433
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	2.8	0.9540
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	3.9	0.9511
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	5.5	0.9337
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	6.5	0.9396
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	8.1	0.9360
AT2G36145			unknown protein		Lus10022687 [exp]	8.9	0.9371

Compare expression of checked genes

Lus10000221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.