Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24170 993 / 0 Endomembrane protein 70 protein family (.1) AT5G10840 989 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 984 / 0 Endomembrane protein 70 protein family (.1.2) AT3G13772 887 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 866 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 493 / 4e-167 Endomembrane protein 70 protein family (.1.2) AT4G12650 479 / 9e-162 Endomembrane protein 70 protein family (.1) AT2G01970 332 / 1e-105 Endomembrane protein 70 protein family (.1) AT1G14670 325 / 8e-103 Endomembrane protein 70 protein family (.1) AT5G37310 316 / 2e-99 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026254 [exp] 1011 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 1008 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 913 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 908 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10027831 [exp] 502 / 9e-171 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 496 / 1e-168 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 484 / 1e-163 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 364 / 1e-117 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10042286 [exp] 320 / 5e-101 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106600 [exp] 1034 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 1030 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 997 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 980 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 885 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 489 / 1e-165 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 482 / 4e-163 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.014G172200 [exp] 480 / 3e-162 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.002G217300 [exp] 479 / 5e-162 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 324 / 1e-102 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10000222 pacid=23162618 polypeptide=Lus10000222 locus=Lus10000222.g ID=Lus10000222.BGIv1.0 annot-version=v1.0 ATGGCGAGGGCCTCTCTCGCTACCGGACTACTATGGATTTCCTTCTGCGTTTCCATGTTCTTCATCCCTGTACGCTCCTTTTACCTCCCTGGCGTCGCGC CCCAAGATTTCCATACGGGGGATGACTTGAAGGTGAAAGTAAACAAGCTGACTTCTACGAAAACACAGCTTCCTTATACATTCTATTCCCTCCCATTTTG CCAGCCGGCGAAGATTGTTGACAGCACTGAGAATCTGGGAGAAGTACTTCGTGGTGATCGTATTGAAAACTCTCCATATGTGTTTAAAATGAGGGAACCG CAAATGTGTAAAATTGTATGTCACAGGCAACTTGATGATAAGACTGCAAAGCAGTTCAAGGAGAAGATAGATGATGAGTATCGGGTTAACATGATATTGG ACAATCTTCCTCTGGTTGTCCCAATTCCAAGGCTTGATCAGGAAAATTCCGTAGTATACCAACAAGGCTTTCATGTTGGTCTCAAGGGGCTGTATGCTGG AAGCAAGGAGCAAAAGCATTTCATCCACAATCACTTATCATTTACTGTCAAATACCACAAAGATATTCAGACAGATTCTGCTAGGATTGTGGGATTTGAG GTCAAACCATTCAGTGTGAAACACGAGTACGAAGGAGAATGGAAGGGTGAGAATACCCGCCTGACAACATGTGATCCGCATGCGAAACGAGCAGTAACCA GCTCTGAAACTCCACAAGAGGTTGATGATAAGCAAGATATAATATTCACTTATGATGTTGAGTTCAAGGAAAGTGATGTGAAGTGGGCATCTCGCTGGGA TACCTACCTTCTTATGGCTGATGATCAGATCCACTGGTTCTCAATTGTCAATTCTTTGATGATTGTCCTTTTCCTTTCGGGCATGGTGGCTATGATAATG TTACGAACACTTTACCGTGATATCTCCAAGTACAACCAGCTTGAGACCCAGGAAGAAGCACAAGAAGAGACAGGCTGGAAATTGGTGCACGGAGACGTTT TCAGGCCTCCTCCAAACTCAGACTTGCTGTGTGTCTATGTCGGAACAGGGGTCCAATTCTTTGGAATGCTTCTTGTCACCATGATCTTTGCTGCTCTTGG TTTTCTCTCTCCTTCAAACCGTGGTGGGTTGATGACAGCCATGCTTTTGCTCTTTGTGTTTATGGGTCTAATAGCTGGATACGCTGCAACTCGTCTCTTC AAGATGTTCAAGGGGACAGAATGGAAGAAAATAGCCCTCAGGACAGCTTTCATGTTCCCAGCCACAGCCTTTGTAGCATTCTTCATACTGAACGCCCTGA TATGGGGAGAGAAGTCCTCTGGTGCAGTCCCATTCGGAACCATGTTTGCTCTGGTATTCTTGTGGTTTGGAATATCAGTCCCACTGGTCTTTGTGGGTGC TTACATCGGTTTCAAGAAACCAGCCATTGAAGAACCGGTGAAAACCAACAAGATCCCGAGGCAGATCCCTGAACAGGCCTGGTACATGCACCCGGCCTTC TCCATCCTGATTGGAGGCATTCTTCCGTTTGGAGCTGTGTTCATCGAGCTCTTCTTCATCCTGACGTCAATATGGCTGCACCAGTTCTACTATATATTTG GATTCCTGTTCGTAGTCTTCATAATCCTCATCATAACATGCGCAGAGATAACAATTGTGCTGTGCTACTTCCAGCTATGCAGTGAGGACTACCTCTGGTG GTGGAGGTCGTACCTAACTGCAGGTTCGTCGGCTCTCTATCTCTTCCTCTATGCTGCATTCTACTTCTTCACCAAGCTTGAGATCACGAAACCGGTCTCG GGGATGTTGTACTTTGGGTATATGCTCATCGTGTCGTACGCATTCTTCGTCCTCACTGGTACCATCGGATTCTATGCGTGCTTTTGGTTCACCAGGCTCA TTTACTCTTCAGTAAAGATCGACTGA
AA sequence Show only first row Show all	>Lus10000222 pacid=23162618 polypeptide=Lus10000222 locus=Lus10000222.g ID=Lus10000222.BGIv1.0 annot-version=v1.0 MARASLATGLLWISFCVSMFFIPVRSFYLPGVAPQDFHTGDDLKVKVNKLTSTKTQLPYTFYSLPFCQPAKIVDSTENLGEVLRGDRIENSPYVFKMREP QMCKIVCHRQLDDKTAKQFKEKIDDEYRVNMILDNLPLVVPIPRLDQENSVVYQQGFHVGLKGLYAGSKEQKHFIHNHLSFTVKYHKDIQTDSARIVGFE VKPFSVKHEYEGEWKGENTRLTTCDPHAKRAVTSSETPQEVDDKQDIIFTYDVEFKESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVLFLSGMVAMIM LRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPPNSDLLCVYVGTGVQFFGMLLVTMIFAALGFLSPSNRGGLMTAMLLLFVFMGLIAGYAATRLF KMFKGTEWKKIALRTAFMFPATAFVAFFILNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGAYIGFKKPAIEEPVKTNKIPRQIPEQAWYMHPAF SILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFVVFIILIITCAEITIVLCYFQLCSEDYLWWWRSYLTAGSSALYLFLYAAFYFFTKLEITKPVS GMLYFGYMLIVSYAFFVLTGTIGFYACFWFTRLIYSSVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	0	1
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	1.0	0.8860
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	2.0	0.8856
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	2.6	0.8613
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	4.9	0.8802
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	9.4	0.8591
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	10.0	0.8763
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	10.2	0.8609
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	12.0	0.8239
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	13.3	0.8199
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	15.1	0.8231

Compare expression of checked genes

Lus10000222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.