Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10750 143 / 2e-42 Phosphoenolpyruvate carboxylase family protein (.1) AT4G24080 122 / 2e-35 ALL1 aldolase like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017323 [exp] 145 / 7e-43 AT4G10750 440 / 7e-155 Phosphoenolpyruvate carboxylase family protein (.1) Lus10000224 [exp] 135 / 2e-39 AT4G10750 409 / 3e-143 Phosphoenolpyruvate carboxylase family protein (.1) Lus10003220 [exp] 73 / 7e-18 AT4G10750 93 / 5e-24 Phosphoenolpyruvate carboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145700 [exp] 146 / 1e-43 AT4G10750 435 / 2e-153 Phosphoenolpyruvate carboxylase family protein (.1) Potri.001G084900 [exp] 125 / 8e-37 AT4G10750 211 / 3e-08 Phosphoenolpyruvate carboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF03328 [flax] [poplar] HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family
Representative CDS sequence Show only first row Show all	>Lus10000223 pacid=23174754 polypeptide=Lus10000223 locus=Lus10000223.g ID=Lus10000223.BGIv1.0 annot-version=v1.0 ATGTTCCCGCTAATCCACGACCCGGAATCCGCCAAGAAAGCAGTCTCTTACTGCTGCTACCCTCCCGCAGGGACACGTGGCGCCGCACACCCGGTGATCA GAGCGTCGAAATACGGCCTCGACGACGACTACGTGGCCAACAGCGACAGGGATCTATTTATAATCTGCCAGGTGGAATCGGTGGAGGCAGTGAATAGAAC CGGAGTGATCACAGCAGTCGACGGTGTCGACTGTTTGATGGTGGGTCCGTTGGACTTGAGCGCGGACATGGGCTATTTAAACGACCCGGGACAGCAGAAA GTGAAGGAGATGATAAGCGAGGCCGAGGAGGCTGTGTTGGGCCGGATTAGAAGTAAAGGTTTCGGGATCTATTTGCGATGGGGAAAGATGGGCTTGGGCC GGAGGAGCTGA
AA sequence Show only first row Show all	>Lus10000223 pacid=23174754 polypeptide=Lus10000223 locus=Lus10000223.g ID=Lus10000223.BGIv1.0 annot-version=v1.0 MFPLIHDPESAKKAVSYCCYPPAGTRGAAHPVIRASKYGLDDDYVANSDRDLFIICQVESVEAVNRTGVITAVDGVDCLMVGPLDLSADMGYLNDPGQQK VKEMISEAEEAVLGRIRSKGFGIYLRWGKMGLGRRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	0	1
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	1.7	0.7828
AT3G14760			unknown protein		Lus10042496 [exp]	5.2	0.7407
AT1G21150			Mitochondrial transcription te...		Lus10016552 [exp]	15.3	0.6487
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	18.0	0.6358
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	19.4	0.7700
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	22.8	0.7044
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036120 [exp]	25.6	0.7332
					Lus10034718 [exp]	31.8	0.7326
AT3G47570			Leucine-rich repeat protein ki...		Lus10030636 [exp]	35.3	0.7295
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	36.2	0.7055

Compare expression of checked genes

Lus10000223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.