Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10750 364 / 3e-125 Phosphoenolpyruvate carboxylase family protein (.1) AT4G24080 211 / 5e-67 ALL1 aldolase like (.1) AT4G24070 61 / 5e-12 carbon-carbon lyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017323 [exp] 496 / 3e-177 AT4G10750 440 / 7e-155 Phosphoenolpyruvate carboxylase family protein (.1) Lus10000223 [exp] 137 / 2e-39 AT4G10750 144 / 9e-43 Phosphoenolpyruvate carboxylase family protein (.1) Lus10003220 [exp] 82 / 3e-19 AT4G10750 93 / 5e-24 Phosphoenolpyruvate carboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145700 [exp] 392 / 2e-136 AT4G10750 435 / 2e-153 Phosphoenolpyruvate carboxylase family protein (.1) Potri.001G084900 [exp] 207 / 5e-66 AT4G10750 211 / 3e-08 Phosphoenolpyruvate carboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF03328 [flax] [poplar] HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family
Representative CDS sequence Show only first row Show all	>Lus10000224 pacid=23174753 polypeptide=Lus10000224 locus=Lus10000224.g ID=Lus10000224.BGIv1.0 annot-version=v1.0 ATGGGAGCTCTCACTTCTCCTCTCCCAACTTCCTTCTTCAAATCAAACAATGGCGGAAGTTCCAAGATCAAAACGTTCCTCTGCAGCTCCAAATCCAAAT CCTCCGTCAACTTCCATTCTTCCCCCGCCGTATTCAAATCCCTAACTCCTCTACGATACTCAGCTGGTTCCTCCTCATCGGATCTATCATCGCCTGCTTC CGATTCAGCATCCATCACCTCCGCCGCCGCCGTCTCTTCTCGAAAATCTCTCAAGTCGCGACTGAAAGATGGGGAGACTCTATACGGGCTGTTCCTCCTC AGCTTCTCACCTACTCTCGCGGAAATCGCCGGCCTATCCGGATACGATTTCGTCGTTGTCGATATGGAGCACGGACCCGGCGGGATTACCGAAGCTCTTC ACTGCATGCGTGCTCTGGCTGCTACGCAGACTCCGGCGATTTTGAGATTGCCGGAGAGTTCTCCTGCCTGGGCGAAGAAGGCTCTAGATCTAGAATGGGC TAGGAAGGCTTTGCCCAACTGCCGATTCCCGCCGGCGGGGGTGCGCGGATCGGCGCATACGGTGGTGAGAGCTTCCAGCTACGGGATCGACGAAGGGTAT TTGAGTAATTACGAGGAGGAGCTGCTGATTCTGTGCCAGGTTGAGAGCGAGGAAGGCGTGAAGAATGCAGGCGAGATCGCGGCCGTTGATGGGGTGGACT GCATCCAGATGGGCCCGCTGGATCTGAGCGCCAGCATGGGATACTTGTGGGACCCGGGACACAAGAAGGTCCGGCAGATGCTGCGGACGGCGGAGAAGAC GGTGTTGGACTCCAAGCCTGACGGTAACGGTGGGGGAGGTGGTGGAGCCTACCTGTCCGGGTTCGCGATGCCGTTCGATGGGCCGGTTGATTTGAAAGCA AGAGGCTACCAAATGGTTTCCGGCGCCGTGGACATCGGGCTGTTCCGGAGCGCTGCCGTGGAGGACGTGAGGAAGTTCCGGTTGAGCTTGACGGAGGGAG CCGATGAGGGAGATGAAGAAGGTCCTGACGATGAAAAGTACTGGAGCGAGTAA
AA sequence Show only first row Show all	>Lus10000224 pacid=23174753 polypeptide=Lus10000224 locus=Lus10000224.g ID=Lus10000224.BGIv1.0 annot-version=v1.0 MGALTSPLPTSFFKSNNGGSSKIKTFLCSSKSKSSVNFHSSPAVFKSLTPLRYSAGSSSSDLSSPASDSASITSAAAVSSRKSLKSRLKDGETLYGLFLL SFSPTLAEIAGLSGYDFVVVDMEHGPGGITEALHCMRALAATQTPAILRLPESSPAWAKKALDLEWARKALPNCRFPPAGVRGSAHTVVRASSYGIDEGY LSNYEEELLILCQVESEEGVKNAGEIAAVDGVDCIQMGPLDLSASMGYLWDPGHKKVRQMLRTAEKTVLDSKPDGNGGGGGGAYLSGFAMPFDGPVDLKA RGYQMVSGAVDIGLFRSAAVEDVRKFRLSLTEGADEGDEEGPDDEKYWSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000224 [exp]	0	1
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	3.5	0.8241
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	7.9	0.8241
AT1G32260			unknown protein		Lus10030982 [exp]	14.1	0.6714
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	15.7	0.7986
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	21.9	0.8029
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	22.2	0.7739
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	26.8	0.7951
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	26.8	0.7791
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	28.2	0.7948
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	36.2	0.7685

Compare expression of checked genes

Lus10000224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.