Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 189 / 2e-55 BGLU47 beta-glucosidase 47 (.1) AT1G61820 180 / 1e-53 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 181 / 1e-52 BGLU45 beta-glucosidase 45 (.1.2.3) AT2G44480 169 / 5e-49 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 169 / 1e-47 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G26560 164 / 2e-46 BGLU40 beta glucosidase 40 (.1) AT5G24540 161 / 4e-45 BGLU31 beta glucosidase 31 (.1) AT5G54570 156 / 3e-43 BGLU41 beta glucosidase 41 (.1) AT5G24550 154 / 1e-42 BGLU32 beta glucosidase 32 (.1) AT3G60130 151 / 6e-42 BGLU16 beta glucosidase 16 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032660 [exp] 489 / 1e-164 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018353 [exp] 203 / 7e-61 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007656 [exp] 202 / 1e-60 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10032659 [exp] 199 / 1e-60 AT4G21760 300 / 2e-97 beta-glucosidase 47 (.1) Lus10007655 [exp] 200 / 2e-59 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10004654 [exp] 163 / 6e-46 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031235 [exp] 162 / 2e-45 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 161 / 4e-45 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10043092 [exp] 164 / 5e-45 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403900 [exp] 296 / 8e-97 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.004G019800 [exp] 205 / 7e-62 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 201 / 4e-60 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 200 / 6e-60 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 192 / 8e-57 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 185 / 6e-54 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.001G015100 [exp] 167 / 2e-47 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 164 / 3e-46 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 164 / 3e-46 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109699 [exp] 160 / 3e-46 AT5G44640 288 / 5e-94 beta glucosidase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10000225 pacid=23177789 polypeptide=Lus10000225 locus=Lus10000225.g ID=Lus10000225.BGIv1.0 annot-version=v1.0 ATGCGTCAGTACCTCGGAGCTACACTTCCTAGTTTCACTGCCGAGCAAATGGGTTATGTTAAAGGGAGCATAGATTTCATTGGCTTAAACCATTATTCGG CACTGTATGCAAAAGATTGCCTCTATTCATCCTGTCCTCCGGGAGGTTCAGATCATGCCATCCGAGGCTATGTTTATACCACTGGGGAACGAGATGGGGT TACAATTGGTCCACCGACTGGAAATGTAAGGTTCTTTGTAGTTCCAAGTGGGATGGAGAATATTGTCAACTATCTGAAGAAAAGATACAACAATATGCCA TTGTATGTCACTGAAAATGGATATGGGCCTCCACCGGATGAAGCTGAACAACTGCAGCAGATATTGGAGGATTCCAGCAGAATTGGATACCACAAGTCCT ACATTGCTGCTCTTGCCAGATCCATAAGGGATGGAGCTGATGTAAGAGGCTACTTTGTGTGGAGCTTGATGGACAACTTTGAGTGGGTTGATGGTTACAC TGTTAGATATGGCTTGTATTATGTGGACCGGCAGACACTTGACCGTATCCCCAAGAAATCTGCGATGTGGTATAAACATTTTCTGGCCAATTCTTCCGCT CAAACTGCTGGGCTTAGCTTGGTACCGGGGAGACTGCACGAAACTTTGATCAATAATGGAGTCGTAGATACAATATGTGATCTTGTGGTTTTTGCTGCTT CTGGCGGCGCAAGTGAGAAATTAGCATCTGGGCTTCTTCAGCCATTTGTATCTCACTTAAAAACTGCCAGCGATCAGATCTCCAAAGGCGGTTACTCCAT CATTCTCCGTCCTTCTTCTTCACCCAATACCTCCACTCCCTGGTTCACTAAAGCCACTCTCCAAAGATTTGTTAGGTTTGTCAGCACACCAGAAGTTCTC GAGAGATTTGTGACTATTGAAACTGAACTTGAGCAGATTGAGAGTTCAGTTCACTCTCATGAGCTCTACAAATCGACTGTGTCATCTAAGGTATGTTCAA AGTGA
AA sequence Show only first row Show all	>Lus10000225 pacid=23177789 polypeptide=Lus10000225 locus=Lus10000225.g ID=Lus10000225.BGIv1.0 annot-version=v1.0 MRQYLGATLPSFTAEQMGYVKGSIDFIGLNHYSALYAKDCLYSSCPPGGSDHAIRGYVYTTGERDGVTIGPPTGNVRFFVVPSGMENIVNYLKKRYNNMP LYVTENGYGPPPDEAEQLQQILEDSSRIGYHKSYIAALARSIRDGADVRGYFVWSLMDNFEWVDGYTVRYGLYYVDRQTLDRIPKKSAMWYKHFLANSSA QTAGLSLVPGRLHETLINNGVVDTICDLVVFAASGGASEKLASGLLQPFVSHLKTASDQISKGGYSIILRPSSSPNTSTPWFTKATLQRFVRFVSTPEVL ERFVTIETELEQIESSVHSHELYKSTVSSKVCSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	0	1
					Lus10040920 [exp]	1.7	0.9067
AT3G48170		ALDH10A9	aldehyde dehydrogenase 10A9 (....		Lus10034115 [exp]	2.4	0.8538
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	6.2	0.8381
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	7.7	0.8837
AT1G55915			zinc ion binding (.1)		Lus10035762 [exp]	7.7	0.8259
AT1G52320			unknown protein		Lus10035887 [exp]	8.4	0.8506
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	9.4	0.8487
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10030704 [exp]	10.0	0.8603
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	12.8	0.8610
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	17.2	0.8633

Compare expression of checked genes

Lus10000225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.