Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37970 209 / 2e-68 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 76 / 2e-16 SOUL heme-binding family protein (.1) AT5G20140 46 / 8e-06 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017193 [exp] 293 / 5e-102 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10027752 [exp] 229 / 9e-77 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10000106 [exp] 166 / 3e-52 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10035541 [exp] 85 / 5e-21 AT2G37970 131 / 2e-39 SOUL heme-binding family protein (.1) Lus10022712 [exp] 82 / 1e-18 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 81 / 2e-18 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10013345 [exp] 50 / 2e-07 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109400 [exp] 225 / 2e-75 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.016G098500 [exp] 68 / 1e-13 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 47 / 3e-06 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.015G080000 [exp] 40 / 0.0005 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10000227 pacid=23175337 polypeptide=Lus10000227 locus=Lus10000227.g ID=Lus10000227.BGIv1.0 annot-version=v1.0 ATGACATTCCCGACTGCACCGCCACCGTCACCGCCACCGCTCCAAAACGGTCGCGGTGGACGCAGGAAATCCACAAGGCCACGAGTACGAGATCCGCAAA ACGGTCCATCAGTCGCACAAGTCACCTACGACCCGTCTCAGTTCAAGGGCAACAAAGACGGCGGCTTCATTGTCCTCGCCAATTACATCGGCGCTTTAGG AAACCCGCAGAACTCCAAACCGGAGAAGATCGCCATGACCACTCCGGTCATCACCGTGGCAGAGAAGATCAACATGACAGCTCCAGTAGTGACCAAACCA GAAGGGGATAATCACAATATGATGACGATGCAGTTTCTGCTCCCGGCGAAGTATCAGAAGGCGGAAGATGCTCCTCGGCCGTTGGATGAGAGGGTGGTGA TCAAGGAAGTCGGCGAGAGGAAGTACGTTGTGACTCAGTTTTCTGGGATAGCGAGTGATGAGGTGGTGGCTGAGAATCTGGAGAAGCTGAAGAAAAGCTT GGAGAAAGATGGGTATAAGATAGTCGGAGAGTATCTGCTGGCTAGGTATAATCCGCCGTGGACTCTTCCTACTTTCCGGACTAACGAGATCATGGTCCCA ATCGAGTGA
AA sequence Show only first row Show all	>Lus10000227 pacid=23175337 polypeptide=Lus10000227 locus=Lus10000227.g ID=Lus10000227.BGIv1.0 annot-version=v1.0 MTFPTAPPPSPPPLQNGRGGRRKSTRPRVRDPQNGPSVAQVTYDPSQFKGNKDGGFIVLANYIGALGNPQNSKPEKIAMTTPVITVAEKINMTAPVVTKP EGDNHNMMTMQFLLPAKYQKAEDAPRPLDERVVIKEVGERKYVVTQFSGIASDEVVAENLEKLKKSLEKDGYKIVGEYLLARYNPPWTLPTFRTNEIMVP IE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000227 [exp]	0	1
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	14.7	0.6564
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	16.1	0.7126
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	26.5	0.6478
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	32.4	0.6425
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10026352 [exp]	33.8	0.6443
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	33.9	0.6594
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	42.2	0.6458
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	45.5	0.6524
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	61.2	0.6213
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	62.8	0.6322

Compare expression of checked genes

Lus10000227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.