Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 222 / 4e-63 AtRLP7 receptor like protein 7 (.1) AT3G05370 204 / 2e-57 AtRLP31 receptor like protein 31 (.1) AT2G33060 204 / 2e-57 AtRLP27 receptor like protein 27 (.1) AT1G71400 202 / 1e-56 AtRLP12 receptor like protein 12 (.1) AT4G13920 202 / 2e-56 AtRLP50 receptor like protein 50 (.1) AT1G45616 200 / 1e-55 AtRLP6 receptor like protein 6 (.1) AT4G13820 198 / 1e-55 Leucine-rich repeat (LRR) family protein (.1) AT2G33050 198 / 2e-55 AtRLP26 receptor like protein 26 (.1) AT4G13810 196 / 7e-55 AtRLP47 receptor like protein 47 (.1.2) AT2G33020 191 / 1e-52 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 427 / 5e-139 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 393 / 3e-126 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004310 [exp] 362 / 3e-116 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10042239 [exp] 353 / 8e-111 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10019693 [exp] 332 / 6e-107 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004313 [exp] 335 / 1e-106 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10003389 [exp] 337 / 3e-105 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10009330 [exp] 327 / 2e-103 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10016402 [exp] 317 / 1e-100 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 381 / 3e-124 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 327 / 5e-101 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 250 / 4e-73 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G126900 [exp] 233 / 3e-67 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G008911 [exp] 228 / 1e-65 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.001G400500 [exp] 227 / 1e-65 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.011G055200 [exp] 228 / 2e-65 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.011G104600 [exp] 228 / 4e-65 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.012G027600 [exp] 228 / 6e-65 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.001G437700 [exp] 224 / 4e-64 AT1G47890 397 / 4e-122 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000228 pacid=23156749 polypeptide=Lus10000228 locus=Lus10000228.g ID=Lus10000228.BGIv1.0 annot-version=v1.0 ATGTCCCGCTGCAACCTTTCGGGCCCCATTGATCCCTCCCTCTCAAAACTTAAGTCCCTTTCCATAGTCGAGCTGAGATACAACAATTTCTCTTCTCCAT TCCCTGATTCATTTGCAGAATTACAGAACTTAACTTCCCTAAGCCTGATGTCTTGCGGGCTGATAGGCAAATTTCCTACAAAGATACTCCAAATGCCAAG CCTGGAGCTTCTTGACCTGTCCAATAACAAAATGCTTCAAGGGGTACTTCCAGAGTTTCCTCAAAATCACTCTATGAAGAAATTGGGACTCAGTGGGACG AACTTTAACGGTGTGTTGCCTCCATCAATCCGAAACCTTCAAAATCTATCATGGATAGATATTTCAAAATGCAATTTCACCGGAACAATTCCCAAGACGC TCGGAAGTTTGACTCAACTAGAGTCTTTGGATTTGTCGTTCAACGATTTCACAGGTCCTATCCCTCGAATCATTTTTCAACTTGGAAAACTTGAAGCCCT TTACCTTTCATCCAACAGATTCAGTGGAAGTATCCAATTAAGTTGGACTCAGACACTCCAAAACCTCAAGTTCCTTGATCTGTCATACAACAAGTATTTG ACAGTGGATACAAGTGGAAACTCTTCCATCTTTCCTCAGTTGGAAGTACTGATATTGACATCATGCAAACTGACAACATTTCCACAGTTGGACAACCAAA CATGGCTAGCGTGGCTAGATCTTTCAGACAACAATATCAATGGGGTGGTACCTCGTTGGATTTTGGAGTCGACCTCTCTAATCAATCTCAATATTTCATG CAACAATCTAGTGGGTTTTCACGTACGACCCACTTCTCTTCCCAGACTTGAATACTTGGACATGCATGACAACCAGCTCCAAGGGGATTTTTCAAACATT CTAGCATTATCATTATCCTACGTGGATTGCTCGCACAATCTTTTCAGCAGTTGGAATCCAGCTAAAGCTATCAATAACTTTCCCCTTGGATACTTATCAC TATCCAACAATAGCCTCACAGGAGCCATTCCAACAACGATTTGCAATTTTGCAGAGCTTGGAGTCCTTGACCTATCAAACAACAATTTCAGTGGCATAAT ACCAGACTGTCTGATAGAGAACACCAAAACACTTGTTGTCCTAGATCTTAGTGGAAATAAGATCAACGGCAGCATACCGAACAAATTCCAAGCTCCTTGT TCATTAGAAACTCTTGATCTCAACAACAACCAACTCGAGGGAAGGGTTCCAAACTCCTTGGTGAGTTGCACGGCATTGCAAGTTTTAGATCTCGGGAACA ACAAAATCTCAGATGGTTTCCCATGTCTTCAAAGAATCAATTCCAGTTTACGTGTCCTTATCTTGAGGAACAACCGCTTTAACGGGAGGATTTGGTGCCC ACATGGTCGTCCCATTCTTAGCTACATGGGAAGCCATGATGAAAGTAGATGCAAACCAAATGAATGGTCACCTCAGATATGGGCCGGTCTTCTTTAA
AA sequence Show only first row Show all	>Lus10000228 pacid=23156749 polypeptide=Lus10000228 locus=Lus10000228.g ID=Lus10000228.BGIv1.0 annot-version=v1.0 MSRCNLSGPIDPSLSKLKSLSIVELRYNNFSSPFPDSFAELQNLTSLSLMSCGLIGKFPTKILQMPSLELLDLSNNKMLQGVLPEFPQNHSMKKLGLSGT NFNGVLPPSIRNLQNLSWIDISKCNFTGTIPKTLGSLTQLESLDLSFNDFTGPIPRIIFQLGKLEALYLSSNRFSGSIQLSWTQTLQNLKFLDLSYNKYL TVDTSGNSSIFPQLEVLILTSCKLTTFPQLDNQTWLAWLDLSDNNINGVVPRWILESTSLINLNISCNNLVGFHVRPTSLPRLEYLDMHDNQLQGDFSNI LALSLSYVDCSHNLFSSWNPAKAINNFPLGYLSLSNNSLTGAIPTTICNFAELGVLDLSNNNFSGIIPDCLIENTKTLVVLDLSGNKINGSIPNKFQAPC SLETLDLNNNQLEGRVPNSLVSCTALQVLDLGNNKISDGFPCLQRINSSLRVLILRNNRFNGRIWCPHGRPILSYMGSHDESRCKPNEWSPQIWAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10000228 [exp]	0	1
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	8.5	0.8545
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	9.0	0.8216
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	13.1	0.8193
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	13.7	0.7970
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	14.8	0.8239
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	16.5	0.8042
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	16.7	0.7636
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	18.4	0.7959
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	19.8	0.7841
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	21.9	0.7988

Compare expression of checked genes

Lus10000228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.