Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 155 / 2e-44 unknown protein AT4G32920 149 / 2e-42 glycine-rich protein (.1.2.3) AT5G47020 108 / 6e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043045 [exp] 254 / 5e-79 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 248 / 1e-76 AT5G11700 1470 / 0.0 unknown protein Lus10005497 [exp] 156 / 1e-44 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 153 / 1e-43 AT5G11700 1835 / 0.0 unknown protein Lus10007257 [exp] 114 / 3e-30 AT5G47020 1321 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058300 [exp] 158 / 2e-45 AT5G11700 1779 / 0.0 unknown protein Potri.006G234500 [exp] 153 / 8e-44 AT5G11700 1793 / 0.0 unknown protein Potri.003G086200 [exp] 121 / 2e-32 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 116 / 1e-30 AT5G47020 1624 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000229 pacid=23153299 polypeptide=Lus10000229 locus=Lus10000229.g ID=Lus10000229.BGIv1.0 annot-version=v1.0 ATGGTCCTTCTAGGAGATATTAGCTTAGTGATGCTTAGTCTGCTACAGATGTACTCGATATCGCTGCTCAACTTCCTATTAGTTTTGTTTATTCTTCCTC TGGGGATATTGTTTCCATTCCCTGCTGGGATCAGTGCTTTGTTCAGTCATGGACCGAGACGTTCGGCAGGTCTTTCTCGTCTATATGCTTTGTGGAATTT TACATCCTTGATCAACGTTGTGGTAGCATTAGTATGCGGATTTGTTCATTACATGAGTCGCTCAAGGGAAAGCCACCTCAACTTGCCGTCCTGGAATTTT AGCATGGATGAAAGCGAGTGGTGGATACTTCCATGTGGGCTGTTGGTTTGTAAGATTGTGCAAGCACGGCTGATTGATTGTCACATTGCTAACCAAGAAA TCCAAGACTACTCCTTGTACAGTAGCGATCCAGGAGTGTTCTGGCAAGCTTGA
AA sequence Show only first row Show all	>Lus10000229 pacid=23153299 polypeptide=Lus10000229 locus=Lus10000229.g ID=Lus10000229.BGIv1.0 annot-version=v1.0 MVLLGDISLVMLSLLQMYSISLLNFLLVLFILPLGILFPFPAGISALFSHGPRRSAGLSRLYALWNFTSLINVVVALVCGFVHYMSRSRESHLNLPSWNF SMDESEWWILPCGLLVCKIVQARLIDCHIANQEIQDYSLYSSDPGVFWQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32920			glycine-rich protein (.1.2.3)		Lus10000229 [exp]	0	1
AT4G16060			unknown protein		Lus10016832 [exp]	1.4	0.7665
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	7.9	0.7367
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	10.5	0.7703
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	12.2	0.7384
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	13.1	0.7095
AT5G02510			unknown protein		Lus10024410 [exp]	19.7	0.7177
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	23.6	0.7238
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	25.5	0.6903
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	29.6	0.7424
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	39.3	0.7105

Compare expression of checked genes

Lus10000229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.