Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50990 516 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 358 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 359 / 4e-119 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 351 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 339 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G31920 336 / 9e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 333 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 334 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 324 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043208 [exp] 779 / 0 AT5G50990 514 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032531 [exp] 731 / 0 AT5G50990 625 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 345 / 9e-117 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028837 [exp] 345 / 3e-116 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 345 / 7e-114 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 344 / 8e-114 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 350 / 1e-113 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 346 / 1e-113 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006628 [exp] 337 / 1e-113 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109300 [exp] 561 / 0 AT5G50990 616 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 357 / 5e-118 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 356 / 2e-117 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 352 / 3e-117 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 355 / 2e-116 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 351 / 3e-116 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G252400 [exp] 345 / 1e-115 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G128900 [exp] 350 / 3e-115 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 352 / 9e-115 AT3G22690 582 / 0.0 unknown protein Potri.007G050200 [exp] 347 / 1e-114 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000230 pacid=23142580 polypeptide=Lus10000230 locus=Lus10000230.g ID=Lus10000230.BGIv1.0 annot-version=v1.0 ATGCTTAGTTCGAACGTCGATCCGGATAAGTTCACATTTGCATCCGTGATGCCCGCCTGTGCAAAGCTTGGAAGTCTCCCCCAGGCTCAGTGGCTACACA CAGTGATGATTGAGAAGAGAATCGAAGTGAACTCTATTCTGGTTGCAGCTATGATTGACATGTATTCGAAATGCGGTGGAATCGATGCTGCTAAAAGTGT TTTTGAGAGGGTTCAGCGGGATAATGCTTCGATTTGGAATTCAATGATCAATGGCTTTGCAATTCATGGCTTTGCCTTGGATGCAATTGCAGTGTTTTCA AATATGGAGTTTGAAGACGTCTCTCCGGATAGTATAACGTTTCTAGGACTTCTCACTGCGTGTAGTCATTCCGGCTTGGCCAAAGAAGGTAGACATTATT TCGGTTTGATGAAAATTCGGTATTCGCTCGAACCAGAGCACGAGCATTACGGAGCCCTGGTTGATCTCTTGGGCCGAGCCGGATTTTTAGAGGAAGCTCG TGATGTGATCATGTCAATGCCTATTGAGACGGATGTTGTTATATGGAGGGCCCTTCTTAGTGCTTGTAGACTGCACAAAGCCCCCGAAATCGGTAAGCTT GCGATTGCTAATATCTCGCGGCTGAAAGGTGGTGATTATGTATTGCTTTCGAACATATACTGCTCCCAACAGAAATGGGACAGTGCGCAGAGAGTTAGGG AGATGATGAAGAAGGATGGGGTGAGTAAGAAGAAGGGAATTAGTTGGTTTGAATGGGGCGGGGGATTTCACCATTTCAAGTCTGGTGATAGATCTCATCC TGAGATAGCTGCGGTGTACAAAGTTGTCGGAGGGCTGATTGAAAAGGCGAAGTTGTTTGGGTTTGTCCCCAAGACTGAGTTGGTGATGATGGATGTGTCG GAAGAGGAGAAGGAGGAGAATCTTCATCATCACAGTGAAAAGTTGGCGTTGGCGTACGGGATTCTGAAGACTGCTCCTGGAACGGAAATAAGAATCTCAA AGAATCTTCGAATCTGTGACGACTGCCACAGCTGGTTTAGATTTGTTTCGATGGCGTTGAACCGAGTTATTCTTGTTAGAGATCGGGTCCGGTTTCACAG GTTTGAAGGGGGATCGTGTTCTTGTGGAGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10000230 pacid=23142580 polypeptide=Lus10000230 locus=Lus10000230.g ID=Lus10000230.BGIv1.0 annot-version=v1.0 MLSSNVDPDKFTFASVMPACAKLGSLPQAQWLHTVMIEKRIEVNSILVAAMIDMYSKCGGIDAAKSVFERVQRDNASIWNSMINGFAIHGFALDAIAVFS NMEFEDVSPDSITFLGLLTACSHSGLAKEGRHYFGLMKIRYSLEPEHEHYGALVDLLGRAGFLEEARDVIMSMPIETDVVIWRALLSACRLHKAPEIGKL AIANISRLKGGDYVLLSNIYCSQQKWDSAQRVREMMKKDGVSKKKGISWFEWGGGFHHFKSGDRSHPEIAAVYKVVGGLIEKAKLFGFVPKTELVMMDVS EEEKEENLHHHSEKLALAYGILKTAPGTEIRISKNLRICDDCHSWFRFVSMALNRVILVRDRVRFHRFEGGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	1.0	0.9027
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	2.0	0.7946
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	5.5	0.7761
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	5.6	0.7097
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	6.9	0.7970
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	8.2	0.8075
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	11.8	0.7490
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	12.0	0.7593
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	13.4	0.7566
					Lus10008157 [exp]	15.0	0.7460

Compare expression of checked genes

Lus10000230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.