Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 328 / 4e-107 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 260 / 5e-81 AtTPS02 terpene synthase 02 (.1) AT4G16740 241 / 2e-73 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 229 / 8e-69 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 225 / 5e-67 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 225 / 5e-67 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 223 / 3e-66 AtTPS10 terpene synthase 10 (.1) AT5G23960 169 / 1e-46 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 148 / 7e-39 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 147 / 1e-38 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018280 [exp] 924 / 0 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018392 [exp] 573 / 0 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10035240 [exp] 569 / 0 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10007622 [exp] 378 / 7e-130 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10040632 [exp] 257 / 1e-84 AT1G61680 153 / 2e-44 terpene synthase 14 (.1.2) Lus10018390 [exp] 244 / 7e-75 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10007624 [exp] 240 / 4e-73 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10031590 [exp] 236 / 1e-71 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10018500 [exp] 222 / 7e-66 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030400 [exp] 415 / 2e-141 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.004G030200 [exp] 410 / 2e-139 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 350 / 6e-117 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G023008 [exp] 258 / 6e-80 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 258 / 2e-79 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G085500 [exp] 256 / 4e-79 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.019G022338 [exp] 256 / 6e-79 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G032100 [exp] 253 / 2e-78 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 241 / 6e-73 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 240 / 1e-72 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10000231 pacid=23141279 polypeptide=Lus10000231 locus=Lus10000231.g ID=Lus10000231.BGIv1.0 annot-version=v1.0 ATGATGGAGAATCGCAGCTACAGAATGGAAGAAGCAAGGCTAATGTTTGAGCAAATAATGGAAGAAGGAAAGTCGTCCATGGAAAACTTAGTAATGATAG ACTCTCTGCAACGCTTAGGTCTAGATTACTACTTCCAGGAAGATATCTCCGCAGTACTGAAGCAACAGTATTACTACTACTGTAGTAGTACTATTACAAA CCATGATGGTGATGATGATGATCTTCTGGAGACTTCCTTGCGCTTTCGGTTGCTAAGGCAACAAGGTTATCACGTTCCTTCAGACATGTTCCAGAAATTC ATAACCCAGAAAGGCAAGTTGGGAGATAATGATATAAGAGGATTGGTCGAACTGTACGAAGCATCGTTCTGGAGTATAACAGGCGAAAGCATTCTGCACG AAGCCGGACAAGTTAGTGCTGAGATGCTAAGATACTTAAAGGATCACAACATCCTTGCAAATTACACTTTGAGGTGTCCTTTTCATAGAAGCTTGCCCAA ATTCTACATTAAGAACTATCTCAACATTTTGCATGGGACACCAATCAAGCACTACTACAACGACACATTTACGGATCTAGTCAAACTCGAGTTCAACATT AATCAGTACATGCATCGGGAGGAAGTCAACCAAGTTGTAAAGTGGTGGAAGCAGTTAGGACTGGCGGAAGAGTTAAAATTTGCGAGGAACGAGCCAGTGA AGTGGTATATGTGGCCGCTGGCAATCTTAACGGACCCGAAATTCTCTGAAGAAAGAATCGAGCTAACCAAACCTATTTCATTAGTGTACCTCATAGACGA TATCTTCGATATCTACGGACCACTTGATGAACTCATTCTCTTCACTGAAACTGTTACGAGATGGGACATCGCAGCGGCAGAACAATTACCTGACTATATG AACAAGTGCTTCATGGCTCTCCACGAAGTCACCAATCAATTTGGGTACAAAGTGTACAAAACACATGGATACGATCCAACACACTCTCTACAACAAACAT GGGCAAAACTGTTCAAGGCATTTCTAGTTGAAGCCAAATGGTTCCATTCAAGAAAGTGTCCAAAAGCAGAAGAGTACTTGAAGAATGGGATAATGAGTTC GGGTGTACAATTAGTGCTCATTCACCTCTTCTTCCTCTTGGGTCATGGCCTCACAAAGAGAAATGTGGACCTACTCGACGGTGATAATCCTCCTATTATT TCATCGGTCGCAAAAATTCTTCGGTTATGCGACGATCTTTCAGCAATGGACGAAAAGCAAGACGAGTATGATGGGTCTTATGTGGATTGCTACATGAAGG AGCATCCTGAGTCAACGTTGCATGGTGCGAGGAAGCATGTGATGGAGATGATTGAAGATACGTGGAAGCATTAA
AA sequence Show only first row Show all	>Lus10000231 pacid=23141279 polypeptide=Lus10000231 locus=Lus10000231.g ID=Lus10000231.BGIv1.0 annot-version=v1.0 MMENRSYRMEEARLMFEQIMEEGKSSMENLVMIDSLQRLGLDYYFQEDISAVLKQQYYYYCSSTITNHDGDDDDLLETSLRFRLLRQQGYHVPSDMFQKF ITQKGKLGDNDIRGLVELYEASFWSITGESILHEAGQVSAEMLRYLKDHNILANYTLRCPFHRSLPKFYIKNYLNILHGTPIKHYYNDTFTDLVKLEFNI NQYMHREEVNQVVKWWKQLGLAEELKFARNEPVKWYMWPLAILTDPKFSEERIELTKPISLVYLIDDIFDIYGPLDELILFTETVTRWDIAAAEQLPDYM NKCFMALHEVTNQFGYKVYKTHGYDPTHSLQQTWAKLFKAFLVEAKWFHSRKCPKAEEYLKNGIMSSGVQLVLIHLFFLLGHGLTKRNVDLLDGDNPPII SSVAKILRLCDDLSAMDEKQDEYDGSYVDCYMKEHPESTLHGARKHVMEMIEDTWKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	0	1
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	2.8	0.9251
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	3.7	0.9179
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	6.3	0.8895
					Lus10000488 [exp]	7.7	0.8928
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10026956 [exp]	7.7	0.8852
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	9.5	0.8739
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	9.6	0.9000
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	9.8	0.9032
AT3G57680			Peptidase S41 family protein (...		Lus10040494 [exp]	10.5	0.8690
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	11.5	0.8840

Compare expression of checked genes

Lus10000231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.