Plant FIBer expression Database

Lus10000232 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45170 82 / 4e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040631
[exp]
216 / 1e-70 AT5G45170 427 / 3e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10018280
[exp]
90 / 1e-21 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G112500
[exp]
110 / 1e-29 AT5G45170 386 / 2e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10000232 pacid=23141278 polypeptide=Lus10000232 locus=Lus10000232.g ID=Lus10000232.BGIv1.0 annot-version=v1.0
ATGGAAGCGGCTTCAACTACTGCTTCTTCTTCTTCCTCAATTCTTCACACCTTCAATCGCACCATAAACCATGGCAGATTCTCTCCACGATACAACACCA
ATTTGGATTTTCCCCCTTCATTGCCCTTCACTGCCCCGAGAATATTCAACCTCGCGCCCAGGAAATGCTCAAAGCCGTCAAATAGGTTCACCGCTTTCAG
CTCCTCACCCTCCACCTCAATTCCACTTGAACAGAACCCACCTCCGGAGCTTGCTATTCTCCTTGAAGTTGATGGGGTCCTTATAGATGCTTATCGCTTG
GGGAATCGCCAGGCTTTTAATGTAGCATTCCGGAAGCTGGGGCTTGACTGTGCCAATTGGACTGAACCTATCTACATGGACCTTCTAAGGTGA
AA sequence
>Lus10000232 pacid=23141278 polypeptide=Lus10000232 locus=Lus10000232.g ID=Lus10000232.BGIv1.0 annot-version=v1.0
MEAASTTASSSSSILHTFNRTINHGRFSPRYNTNLDFPPSLPFTAPRIFNLAPRKCSKPSNRFTAFSSSPSTSIPLEQNPPPELAILLEVDGVLIDAYRL
GNRQAFNVAFRKLGLDCANWTEPIYMDLLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45170 Haloacid dehalogenase-like hyd... Lus10000232
[exp]
0 1
AT2G39670 Radical SAM superfamily protei... Lus10002698
[exp]
6.9 0.7748
AT3G14850 TBL41 TRICHOME BIREFRINGENCE-LIKE 41... Lus10009209
[exp]
25.8 0.7676
AT1G32240 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like sup... Lus10035386
[exp]
26.5 0.7710
AT4G33480 unknown protein Lus10033501
[exp]
32.5 0.7721
AT3G53130 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME... Lus10014399
[exp]
34.4 0.7864
AT1G19150 LHCA2*1, LHCA2*... photosystem I light harvesting... Lus10027649
[exp]
39.5 0.7799
AT2G33255 Haloacid dehalogenase-like hyd... Lus10004405
[exp]
40.4 0.7705
AT1G32240 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like sup... Lus10030989
[exp]
46.0 0.7549
AT5G52420 unknown protein Lus10039249
[exp]
48.9 0.7475
AT4G31780 UGT81A1, EMB279... UDP-glycosyl transferase 81A1,... Lus10026895
[exp]
49.0 0.7723

Lus10000232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.