Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22520 216 / 7e-67 unknown protein AT4G14840 204 / 7e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041202 [exp] 419 / 2e-146 AT3G22520 327 / 1e-104 unknown protein Lus10006124 [exp] 316 / 1e-102 AT3G22520 340 / 4e-106 unknown protein Lus10010551 [exp] 314 / 1e-99 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021916 [exp] 252 / 1e-86 AT3G22520 129 / 5e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153800 [exp] 253 / 1e-81 AT4G14840 329 / 7e-106 unknown protein Potri.010G086700 [exp] 250 / 2e-80 AT3G22520 320 / 5e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000233 pacid=23160148 polypeptide=Lus10000233 locus=Lus10000233.g ID=Lus10000233.BGIv1.0 annot-version=v1.0 ATGGCTGAATCTCGCAATAGGCTTTCTTCCTTACTCGTTATGGACTTCCCTGCACTGGTTTTGTCAAGAAATTTCTCCGAACTTGCACCTCTAGCGACAA AACTTCTGACCGATCCTCGCCTGACTGCCGAACATACTGTCAAACTGAAGCTGATTGAAGAGATTCCGTCTTTTAGAGACGTTTTTCTACAGAGTAGGGA GATAATAGACCAAGTTGACAGGGAGTTCGCCATGCTTGAGTCGAACAAATCCAAGGTGGCTACTCTCAAGAGCGAGTATAGCGAACTGAAGGAGAAAACG GACCAACTTCAGGGTCAGATAGATGCAAACTTGTCGACCGTAGAAGAAATTGATAAGGAAATCGCCAGACTTCAAGCGCGCAGAGCTGAGCTGATCCGTG CAGTTGAGTCGAACAAAGCTGCTAAGGTGGAGGTGAACTATGCTCAGAAAATGGTGGCGAATGCTATTCCGAATGTAGTGCATGAGATTCAGAATTCCAA CTCGAAGATCCCTGAATGGGATTTGACGAGGAGCAATGCAGTGAAGCGGGAAGCTGAGATTCGTTCCAAGTTTGCACCTTTGCAAGGGTTCTCGCTTATT CCACCGCCCTTTCAGGGATTATTCCTTTAG
AA sequence Show only first row Show all	>Lus10000233 pacid=23160148 polypeptide=Lus10000233 locus=Lus10000233.g ID=Lus10000233.BGIv1.0 annot-version=v1.0 MAESRNRLSSLLVMDFPALVLSRNFSELAPLATKLLTDPRLTAEHTVKLKLIEEIPSFRDVFLQSREIIDQVDREFAMLESNKSKVATLKSEYSELKEKT DQLQGQIDANLSTVEEIDKEIARLQARRAELIRAVESNKAAKVEVNYAQKMVANAIPNVVHEIQNSNSKIPEWDLTRSNAVKREAEIRSKFAPLQGFSLI PPPFQGLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22520			unknown protein		Lus10000233 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	2.2	0.9027
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	3.5	0.8643
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	6.5	0.8674
AT2G40070			unknown protein		Lus10027767 [exp]	8.0	0.8641
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	8.3	0.8221
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011567 [exp]	16.9	0.7806
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	17.9	0.8340
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	18.3	0.8638
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	19.0	0.8543
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	25.5	0.8628

Compare expression of checked genes

Lus10000233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.