Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68185 138 / 2e-40 Ubiquitin-like superfamily protein (.1) AT4G26840 50 / 5e-08 ATSUMO1, SUMO1, SUM1 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) AT5G55856 49 / 1e-07 Ubiquitin-like superfamily protein (.1) AT5G55170 46 / 1e-06 ATSUMO3, SUMO3, SUM3 small ubiquitin-like modifier 3 (.1) AT5G55160 44 / 4e-06 ATSUMO2, SUMO2, SUM2 small ubiquitin-like modifier 2 (.1.2) AT2G32765 40 / 0.0001 ATSUMO5, SUM5 SUMO 5, small ubiquitinrelated modifier 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034627 [exp] 421 / 1e-151 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10035259 [exp] 396 / 2e-141 AT1G68185 156 / 3e-47 Ubiquitin-like superfamily protein (.1) Lus10043185 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032560 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032561 [exp] 49 / 1e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118900 [exp] 142 / 4e-42 AT1G68185 164 / 7e-51 Ubiquitin-like superfamily protein (.1) Potri.002G224700 [exp] 52 / 8e-09 AT4G26840 170 / 1e-56 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) Potri.014G158300 [exp] 50 / 4e-08 AT5G55160 171 / 5e-57 small ubiquitin-like modifier 2 (.1.2) Potri.002G224800 [exp] 50 / 4e-08 AT5G55160 172 / 3e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G190300 [exp] 47 / 5e-07 AT5G55160 168 / 7e-56 small ubiquitin-like modifier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF11976 [flax] [poplar] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like
Representative CDS sequence Show only first row Show all	>Lus10000234 pacid=23177779 polypeptide=Lus10000234 locus=Lus10000234.g ID=Lus10000234.BGIv1.0 annot-version=v1.0 ATGGCGCACTCTTTGCAGGCGGATTTGAATGAAGAACTCGAGCCTTTGTTCGATTACCGGCGTGTCCAACCGACGAATTTGGTCTGCCTCGACGATGATG AAACGCCGGTTTGTGCTGCCAAGAAACGGAAAAAGGATCTCAAACCAGTTATTGGCAATGCAGAAGACGATGAGGTGGAGGTCATAGAGGTCGTCAAGCG TATTGAAGAAGAGGAAGAGGAGGACTGGCTACCTCCACCGCCTAAGGTTTCTGTCAATCCCCGGAAGCAGCATTGTGAAGATAAAACGGTTCAAAAACTA AGGTTGAGAACAGAGGAGCTTCTGCAAGCTCTTGCGAAATCAGCTAATCAAGTGTTTCTAGCCCCTGAAGATTTTAAAACGAAGATTCCACTAGAGGAAT CTGATCCAAATGTTGCAGACCTTCTCAGGGAGACGGCTAAAACTGTAAAGCCTGCTGCTGAAAGGGCTAAAATAGTAATATCTGTCCAAGGCCAAGATGG GCTGAAGACATACCGTCTTTACAAGGATGACAGATTCGAGGCTTTCTTCAAGAAGTATGCAGAAAGGGCTAACCTGAAGATTGAGGAGCTGGTGTTTACC TTCGACGGTGACAAGATTGGTCCAAAAGCAACACCTGCTAGCCTTGACATGGAAGATGAGGACATGATTGAGGTGCACTGTAAGAAACCCCTCAAATAA
AA sequence Show only first row Show all	>Lus10000234 pacid=23177779 polypeptide=Lus10000234 locus=Lus10000234.g ID=Lus10000234.BGIv1.0 annot-version=v1.0 MAHSLQADLNEELEPLFDYRRVQPTNLVCLDDDETPVCAAKKRKKDLKPVIGNAEDDEVEVIEVVKRIEEEEEEDWLPPPPKVSVNPRKQHCEDKTVQKL RLRTEELLQALAKSANQVFLAPEDFKTKIPLEESDPNVADLLRETAKTVKPAAERAKIVISVQGQDGLKTYRLYKDDRFEAFFKKYAERANLKIEELVFT FDGDKIGPKATPASLDMEDEDMIEVHCKKPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68185			Ubiquitin-like superfamily pro...		Lus10000234 [exp]	0	1
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	8.7	0.6958
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	12.0	0.6963
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	15.9	0.6117
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	28.7	0.6362
					Lus10021794 [exp]	37.7	0.6015
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	71.6	0.5918
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	90.7	0.5975
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	99.1	0.5939
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011394 [exp]	109.1	0.5631
AT5G52790			CBS domain-containing protein ...		Lus10027527 [exp]	127.0	0.5105

Compare expression of checked genes

Lus10000234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.