Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 312 / 1e-95 disease resistance family protein / LRR family protein (.1) AT1G71400 236 / 6e-68 AtRLP12 receptor like protein 12 (.1) AT4G13810 226 / 5e-65 AtRLP47 receptor like protein 47 (.1.2) AT1G74190 216 / 2e-60 AtRLP15 receptor like protein 15 (.1) AT4G04220 215 / 2e-60 AtRLP46 receptor like protein 46 (.1) AT2G01950 214 / 3e-59 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G32660 207 / 5e-59 AtRLP22 receptor like protein 22 (.1) AT1G71390 206 / 2e-57 AtRLP11 receptor like protein 11 (.1) AT1G74170 207 / 5e-57 AtRLP13 receptor like protein 13 (.1) AT5G49290 206 / 7e-57 ATRLP56 receptor like protein 56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002758 [exp] 1174 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10000220 [exp] 1033 / 0 AT2G34930 312 / 1e-95 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 934 / 0 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 820 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 799 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 796 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 795 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 793 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 782 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 452 / 2e-153 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 382 / 1e-121 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 379 / 2e-120 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 379 / 1e-119 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 376 / 3e-119 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 375 / 6e-119 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 362 / 2e-112 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 359 / 3e-112 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 360 / 4e-112 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 353 / 2e-111 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000236 pacid=23177885 polypeptide=Lus10000236 locus=Lus10000236.g ID=Lus10000236.BGIv1.0 annot-version=v1.0 ATGGTAAACTGCCAACTATACGGTCAGTTGACTGATCGAATCGGGAAGTTCAACAGGCTAAACCGTCTTTCGCTTGATACCAACTCCATATCTGGCCCCC TTCCGTCCTCATTTGGGGAACTGACATCCTTGAAATATGTAAACCTCGCAAACAACCGAATTAACGGGAATATTCCAGAAAGTTTCGGGAAACTTGCAGA GTTGGTAATCTTTGATATTTCGCAGAACTCAATGGAAGGTGTTATTTCCCCTGATATTCACTTTGCTAACCTGACAAAGTTGGGTAGATTGAGCGCATCT GGAAACCACATGGTACTGGAAGTTGGAGCAGATTCAGTTCTCCCTAAGCTCCTTGAAATAATAAACTTGAATTCCTGGCACATTGGACCTCGGTTCCCCA AATGGCTCCAATCATTTCAGTATCTCAAATCTCTCGATCTCTCCAACACCGGAATTTCAGAACCATTTCCAGATTGGTTCTGGGGATCACAATCAGAGTT CTATTATCTGAACTTCTCCCACAACCAAATCCCAGGAAAGCTTCCAAATTTCATGTGTGTTAAGGCTGCAGACTCAATTTATGACTTCAGCTTTAACAAC TTGGACGGTCCACTTCCAATCATCTCATCTAATTTGACTGCATTGGACCTTTCCAATAATTTCATCTCAGGAAACCTGCTCAAGTTCTTGTGCTTCAATC CAGCTCAGATGAGAGACACCGAGTTTCTCAATCTTCAAGGGAACCTTCTGTCTGGAGAGATACCAGATTGTTGGAGGAGTTGGGGGAACTTGAAGGTTAT TAGACTAGGCAACAATGATTTCAAAGGGAACATTTCAAACTCCATTGGAACCTTAAGCAACCTCCTCTCTTTGCGCATTCAGAACACTAGCCTGACTGGT GAAATCCCATTCTCCATCAGCAACTGCTCGAGTCTAGTCTCTATCGACTTCAGGGACAATAGATTACTAGGGAGAATTCCAAAGTGGATTGGGGAAAAAC TTTCAAAGTTGGCCATCATCAATCTACGCGGGAATAGGTTCCATGGGGATATTCCTGATGAGGTTTGCCATCTGCAGCTTTTACAAATCCTGGACCTTTC TCACAACTTTCTATCAGGGAACTTGCCTGAATGTGTTAATAATATCAGTGCCATGGCCGATACACGATACGTTGATCAAGCAGTAATATACCTTTACTTT GGCGGAGCGAAAGCATTTGTCGAAGACGAGATTCTCGTAATGCAAGGGCAGGTTAAGACCTACAGCACCATTTTGAATTACGTCAGAAGTCTGGACCTCT CCTCAAATTTGCTTTCAGGGGAGATTCCAAAGCAGATCACAAGCCTTGTAGCGTTGAAGTATCTGAACTTGTCGCGCAACTCGTTCTCTGGACCAATCCC GGGGAACATAGCTGCCATGGAGTCGTTGGAATCTTTGGACTTGTCCGAAAACAAACTACTCGGAATGATCCCAGTTGGAATGGCAAGCATGACATTCCTG AATCACTTGAATTTGTCCTGCAACAACTTGAGTGGGAGAATTCCTTCAAGCACACAACTGCAGAGCTTTGATCCATCTAGCTATGTTGGAAACAAGGGAC TTTGTGGTTCTCCATTGATTGTGAACTGCAGCAGCGCTGACAACTTTGTGCCGGGTTCTGGCGAGGGAACTGAAGCTTATGATTCGCACTGGTTCCCTGT CAGTGCAATGCTTGGATATGTGGTAGGGTTTTGTGGCATTGTTGGTCCAGTAGCAGTCCACCAGCAATGGATCACATTGACGAAGTGA
AA sequence Show only first row Show all	>Lus10000236 pacid=23177885 polypeptide=Lus10000236 locus=Lus10000236.g ID=Lus10000236.BGIv1.0 annot-version=v1.0 MVNCQLYGQLTDRIGKFNRLNRLSLDTNSISGPLPSSFGELTSLKYVNLANNRINGNIPESFGKLAELVIFDISQNSMEGVISPDIHFANLTKLGRLSAS GNHMVLEVGADSVLPKLLEIINLNSWHIGPRFPKWLQSFQYLKSLDLSNTGISEPFPDWFWGSQSEFYYLNFSHNQIPGKLPNFMCVKAADSIYDFSFNN LDGPLPIISSNLTALDLSNNFISGNLLKFLCFNPAQMRDTEFLNLQGNLLSGEIPDCWRSWGNLKVIRLGNNDFKGNISNSIGTLSNLLSLRIQNTSLTG EIPFSISNCSSLVSIDFRDNRLLGRIPKWIGEKLSKLAIINLRGNRFHGDIPDEVCHLQLLQILDLSHNFLSGNLPECVNNISAMADTRYVDQAVIYLYF GGAKAFVEDEILVMQGQVKTYSTILNYVRSLDLSSNLLSGEIPKQITSLVALKYLNLSRNSFSGPIPGNIAAMESLESLDLSENKLLGMIPVGMASMTFL NHLNLSCNNLSGRIPSSTQLQSFDPSSYVGNKGLCGSPLIVNCSSADNFVPGSGEGTEAYDSHWFPVSAMLGYVVGFCGIVGPVAVHQQWITLTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	1.0	0.9080
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	1.4	0.8470
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	5.5	0.8260
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	6.2	0.7674
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	7.7	0.7978
					Lus10029758 [exp]	7.9	0.7801
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	8.9	0.8114
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	9.9	0.7641
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	11.5	0.7720
AT5G48385			FRIGIDA-like protein (.1)		Lus10038038 [exp]	14.8	0.7342

Compare expression of checked genes

Lus10000236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.